Browse Element(s) Details


OsAffx.12851.1.S1_at

Description tigr:9631.m01339
TID=OsAffx.12851.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pathogenesis-related protein F20M13.220 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1403011/11Thaumatin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13984OsAffx.3235.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g13984OsAffx.12849.1.S1_at11/113+7564954..7568832expressed protein
LOC_Os03g14000Os.7524.1.S1_at11/113+7570923..7576500Acyl CoA binding protein, expressed
LOC_Os03g14010Os.8022.1.S1_at11/113+7578758..7582090Glycosyl hydrolase family 10 protein, expressed
LOC_Os03g14020Os.20303.1.S1_s_at11/113+7582123..7586658expressed protein
LOC_Os03g14030OsAffx.12851.1.S1_at11/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14030Os.49709.1.S1_at10/113+7590043..7593136Thaumatin family protein, expressed
LOC_Os03g14040Os.32492.1.S1_at10/113+7594971..7597955expressed protein
LOC_Os03g14050Os.12241.1.S1_at11/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14050Os.12241.2.S1_at10/113+7605508..7608663SCUTL1, putative, expressed
LOC_Os03g14060OsAffx.19542.3.S1_x_at6/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g14060OsAffx.21754.1.S1_x_at1/113+7615663..7620799retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0042828biological_processresponse to pathogen
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12851.1.S1_at--734--9311Chr03:7591972..7591996 (25 bp)
TAATTTCACTTCATACGTCAACCCC
LOC_Os03g14030
OsAffx.12851.1.S1_at--607--7011Chr03:7591931..7591955 (25 bp)
GTACTAATTACTCCAGCTTGCTTCA
LOC_Os03g14030
OsAffx.12851.1.S1_at--171--3151Chr03:7591907..7591931 (25 bp)
AATTAACGCTTGCTTTCGCGTGACG
LOC_Os03g14030
OsAffx.12851.1.S1_at--369--4151Chr03:7591891..7591915 (25 bp)
CGCGTGACGTTATTAGCTCGGTTAA
LOC_Os03g14030
OsAffx.12851.1.S1_at--172--6871Chr03:7591856..7591880 (25 bp)
GTTTGTGATTTGCATGCACCACTGC
LOC_Os03g14030
OsAffx.12851.1.S1_at--111--5111Chr03:7591771..7591795 (25 bp)
GCACGGAGTGGTTCTGCTACTAGTA
LOC_Os03g14030
OsAffx.12851.1.S1_at--160--10011Chr03:7591748..7591772 (25 bp)
TAGCATTTTGGGTTGCCTGGTGCAT
LOC_Os03g14030
OsAffx.12851.1.S1_at--1098--7371Chr03:7591721..7591745 (25 bp)
GTGACCGAGCAATGAGTACGCCATA
LOC_Os03g14030
OsAffx.12851.1.S1_at--714--9951Chr03:7591705..7591729 (25 bp)
TACGCCATATCACCTTATCTCATAT
LOC_Os03g14030
OsAffx.12851.1.S1_at--138--2451Chr03:7591664..7591688 (25 bp)
AAAATGTGTGCGAGCGCGGTGTCCC
LOC_Os03g14030
OsAffx.12851.1.S1_at--909--8691Chr03:7591645..7591669 (25 bp)
TGTCCCGAAATGTCACGCTTCTAAA
LOC_Os03g14030
Target Sequence 
TAATTTCACTTCATACGTCAACCCCAACCTAACCACTATTAGTACTAATTACTCCAGCTTGCTTCAATTAACGCTTGCTT
TCGCGTGACGTTATTAGCTCGGTTAAGTCATAAAGCGTTTGTGATTTGCATGCACCACTGCACAAGTAGGTGAGTGAGCA
TGCGTCGGCTCGGGGACACGATAATTAATCGGAGATACTTAGCACGGAGTGGTTCTGCTACTAGTAGCATTTTGGGTTGC
CTGGTGCATTAGTGACCGAGCAATGAGTACGCCATATCACCTTATCTCATATCAAAATGTATGCAAGGAAAATGTGTGCG
AGCGCGGTGTCCCGAAATGTCACGCTTCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis