Browse Element(s) Details


OsAffx.12923.1.S1_x_at

Description tigr:9631.m01838
TID=OsAffx.12923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Seq ID: rhg1_toyosuzu_amplicon
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1863011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18600Os.55612.1.S1_at9/113+10397692..10398864Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g18620Os.50226.1.S1_at11/113+10407958..10412760pentatricopeptide, putative, expressed
LOC_Os03g18630Os.49177.1.S1_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18630OsAffx.12923.1.S1_x_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein
LOC_Os03g18690Os.12727.1.S1_at11/113+10441483..1044527926S protease regulatory subunit 4 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12923.1.S1_x_at--956--6211Chr03:10418642..10418666 (25 bp)
GAGGCGAGCATCGTGCACGGCAACC
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--749--1931Chr03:10418658..10418682 (25 bp)
ACGGCAACCTGACGAGCAACAACAT
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--401--5151Chr03:10418673..10418697 (25 bp)
GCAACAACATCCTGCTCGACGAGGG
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--505--7591Chr03:10418696..10418720 (25 bp)
GGGAACGACGCCAGGATCGCCGACT
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--673--1931Chr03:10418834..10418858 (25 bp)
ACGGACATCTACAGCCTCGGCATGA
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--892--8271Chr03:10418852..10418876 (25 bp)
GGCATGATCATGCTCGAGCTCCTCA
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--881--1871Chr03:10418958..10418982 (25 bp)
ACGAGGTGTTCGACCTTGAGCTCAT
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--735--10751Chr03:10418973..10418997 (25 bp)
TTGAGCTCATGAAGGACGCGGCCGC
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--925--8991Chr03:10419027..10419051 (25 bp)
TGAAGACGCTCAAGCTGGCGCTGCA
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--259--1531Chr03:10419090..10419114 (25 bp)
AGCAGGTTCTCAGACAGCTCGAGCA
LOC_Os03g18630
OsAffx.12923.1.S1_x_at--690--1271Chr03:10419114..10419138 (25 bp)
AGATCAAGCCCTCGGTGGCAGTATC
LOC_Os03g18630
Target Sequence 
GAGGCGAGCATCGTGCACGGCAACCTGACGAGCAACAACATCCTGCTCGACGAGGGGAACGACGCCAGGATCGCCGACTG
CGGCCTGTCGCGCCTCATGAACGCCACGGCCAACTCCAACGTCATCGCCGCGGCGGGCGCGCTGGGCTACCGCGCGCCGG
AGCTCTCCAAGCTGAAGAAGGCCAACGCCAAGACGGACATCTACAGCCTCGGCATGATCATGCTCGAGCTCCTCACCGCA
AAGTCGCCCGGCGACACGACCAACGGCCTCGACCTGCCGCAGTGGGTGGCCTCTGTCGTGGAGGAGGAGTGGACCAACGA
GGTGTTCGACCTTGAGCTCATGAAGGACGCGGCCGCCGCGGGCTCGGAGACCGGCGAGGAGCTCGTGAAGACGCTCAAGC
TGGCGCTGCACTGCGTCGATCCTTCACCGGCGGCGAGGCCAGAGGCCCAGCAGGTTCTCAGACAGCTCGAGCAGATCAAG
CCCTCGGTGGCAGTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12923.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis