Browse Element(s) Details


OsAffx.12942.3.S1_at

Description tigr:9631.m04448
TID=OsAffx.12942.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tubulin beta subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4591011/11F-box family protein, putative
LOC_Os03g1966010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45890OsAffx.3526.1.S1_x_at11/113+25876509..25876990hypothetical protein
LOC_Os03g45900NANA3+25886583..25886984hypothetical protein
LOC_Os03g45910OsAffx.12942.3.S1_x_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45910OsAffx.12942.3.S1_at11/113+25893288..25893782F-box family protein, putative
LOC_Os03g45920Os.11155.1.S1_at11/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45920Os.57140.1.S1_at1/113+25896903..25900877Tubulin beta-8 chain, putative, expressed
LOC_Os03g45930Os.53820.1.S1_at11/113+25914215..25915779expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12942.3.S1_at--147--9371Chr03:25893421..25893445 (25 bp)
TCGACGACGGGATTGCGTCGCTCGC
LOC_Os03g45910
OsAffx.12942.3.S1_at--751--3352Chr03:11035356..11035380 (25 bp)
CACGCCGGTGATCCGTAAACTGTCC
LOC_Os03g19660
OsAffx.12942.3.S1_at--587--7672Chr03:11035362..11035386 (25 bp)
GGTGATCCGTAAACTGTCCGTCGCA
LOC_Os03g19660
OsAffx.12942.3.S1_at--131--8832Chr03:11035364..11035388 (25 bp)
TGATCCGTAAACTGTCCGTCGCATC
LOC_Os03g19660
OsAffx.12942.3.S1_at--158--332Chr03:11035366..11035390 (25 bp)
ATCCGTAAACTGTCCGTCGCATCCA
LOC_Os03g19660
OsAffx.12942.3.S1_at--576--9832Chr03:11035371..11035395 (25 bp)
TAAACTGTCCGTCGCATCCATCAGT
LOC_Os03g19660
OsAffx.12942.3.S1_at--882--8692Chr03:11035376..11035400 (25 bp)
TGTCCGTCGCATCCATCAGTTTTGG
LOC_Os03g19660
OsAffx.12942.3.S1_at--1139--7212Chr03:11035381..11035405 (25 bp)
GTCGCATCCATCAGTTTTGGGCCGA
LOC_Os03g19660
OsAffx.12942.3.S1_at--780--4112Chr03:11035383..11035407 (25 bp)
CGCATCCATCAGTTTTGGGCCGAAG
LOC_Os03g19660
OsAffx.12942.3.S1_at--888--3532Chr03:11035385..11035409 (25 bp)
CATCCATCAGTTTTGGGCCGAAGGC
LOC_Os03g19660
OsAffx.12942.3.S1_at--662--9192Chr03:11035387..11035411 (25 bp)
TCCATCAGTTTTGGGCCGAAGGCCT
LOC_Os03g19660
Target Sequence 
TCGACGACGGGATTGCGTCGCTCGCTGGGGCCACGCCGGTGATCCGTAAACTGTCCGTCGCATCCATCAGTTTTGGGCCG
AAGGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12942.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis