Browse Element(s) Details


OsAffx.13012.1.S1_at

Description tigr:9631.m02435
TID=OsAffx.13012.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2494011/11proline-rich family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24910OsAffx.3315.1.S1_s_at11/113+14167517..14171210nodulation protein, putative, expressed
LOC_Os03g24920Os.36846.1.S1_at11/113+14174966..14178118ubiquitin, putative, expressed
LOC_Os03g24930Os.12007.1.S1_at11/113+14185785..14187966Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os03g24940Os.27135.1.A1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940OsAffx.13012.1.S1_x_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_s_at11/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24940Os.48734.1.S1_at4/113+14192013..14199487proline-rich family protein, putative, expressed
LOC_Os03g24950Os.16999.1.A1_at11/113+14212011..14214838expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13012.1.S1_at--1009--6031Chr03:14193705..14193900 (25 bp)
GAGATTATTTCAGTACTAATAAACT
LOC_Os03g24940
OsAffx.13012.1.S1_at--377--171Chr03:14193699..14193722 (24 bp)
ATTTCAGTACTAATAAACTATTGCA
LOC_Os03g24940
OsAffx.13012.1.S1_at--1007--9811Chr03:14193686..14193710 (25 bp)
TAAACTATTGCAAATATGGAAAACC
LOC_Os03g24940
OsAffx.13012.1.S1_at--1120--10091Chr03:14193676..14193696 (21 bp)
TATGGAAAACCACAACCTGGTGCCA
LOC_Os03g24940
OsAffx.13012.1.S1_at--630--811Chr03:14193508..14193695 (25 bp)
ATGGAAAACCACAACCTGGTGCCAC
LOC_Os03g24940
OsAffx.13012.1.S1_at--751--8511Chr03:14193507..14193694 (25 bp)
TGGAAAACCACAACCTGGTGCCACA
LOC_Os03g24940
OsAffx.13012.1.S1_at--6--8171Chr03:14193506..14193693 (25 bp)
GGAAAACCACAACCTGGTGCCACAA
LOC_Os03g24940
OsAffx.13012.1.S1_at--967--5511Chr03:14193505..14193692 (25 bp)
GAAAACCACAACCTGGTGCCACAAG
LOC_Os03g24940
OsAffx.13012.1.S1_at--362--2431Chr03:14193504..14193691 (25 bp)
AAAACCACAACCTGGTGCCACAAGA
LOC_Os03g24940
OsAffx.13012.1.S1_at--168--2371Chr03:14193503..14193690 (25 bp)
AAACCACAACCTGGTGCCACAAGAT
LOC_Os03g24940
OsAffx.13012.1.S1_at--1120--1691Chr03:14193501..14193688 (25 bp)
ACCACAACCTGGTGCCACAAGATCA
LOC_Os03g24940
Target Sequence 
GAGATTATTTCAGTACTAATAAACTATTGCAAATATGGAAAACCACAACCTGGTGCCACAAGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13012.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis