Browse Element(s) Details


OsAffx.13013.1.S1_at

Description tigr:9631.m02442
TID=OsAffx.13013.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2501011/11GDSL-like Lipase/Acylhydrolase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24960Os.33624.3.S1_x_at10/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24960OsAffx.25216.1.S1_x_at5/113+14228001..14232343Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24970OsAffx.25217.2.S1_x_at11/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.3.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24970OsAffx.29607.5.S1_x_at1/113+14232597..14233688SWIM zinc finger family protein
LOC_Os03g24980OsAffx.25217.2.S1_x_at11/113+14234177..14237333SWIM zinc finger family protein
LOC_Os03g24990Os.33624.3.S1_x_at10/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g24990OsAffx.25216.1.S1_x_at5/113+14237587..14241404Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os03g25000OsAffx.3317.1.S1_at11/113+14247529..14250741GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25010OsAffx.13013.1.S1_at11/113+14255279..14258382GDSL-like Lipase/Acylhydrolase family protein
LOC_Os03g25020OsAffx.25218.1.S1_at11/113+14261154..14263772hypothetical protein
LOC_Os03g25030Os.18713.1.S1_at11/113+14268397..14272079GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25040Os.5919.1.S1_at11/113+14274404..14276702GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os03g25050OsAffx.13014.1.S1_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050OsAffx.13014.1.S1_s_at11/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25050Os.8895.1.S1_at10/113+14277242..1428014210 kDa chaperonin, putative, expressed
LOC_Os03g25060Os.54316.1.S1_at11/113+14281127..14281793expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13013.1.S1_at--82--2391Chr03:14257725..14257749 (25 bp)
AAACGACTACAATCAGCCTTTCTTC
LOC_Os03g25010
OsAffx.13013.1.S1_at--513--10311Chr03:14257743..14257767 (25 bp)
TTTCTTCCAAAACCAATCCTTCATC
LOC_Os03g25010
OsAffx.13013.1.S1_at--429--5951Chr03:14257810..14257957 (25 bp)
GAGAACGCTATCAAGGTCCTAATCG
LOC_Os03g25010
OsAffx.13013.1.S1_at--1076--271Chr03:14257999..14258023 (25 bp)
ATAGGGTGTGTTCCAGGTTATCTCG
LOC_Os03g25010
OsAffx.13013.1.S1_at--719--7871Chr03:14258014..14258038 (25 bp)
GGTTATCTCGGGATATTTCCAAACA
LOC_Os03g25010
OsAffx.13013.1.S1_at--310--5711Chr03:14258053..14258077 (25 bp)
GACTACGATGTGTTTGGCTGCATAA
LOC_Os03g25010
OsAffx.13013.1.S1_at--632--2671Chr03:14258119..14258143 (25 bp)
AAGCGCATGATGCATCGGATCCCTC
LOC_Os03g25010
OsAffx.13013.1.S1_at--1039--9831Chr03:14258151..14258175 (25 bp)
TACAATCACCATACTCTACGTCGAC
LOC_Os03g25010
OsAffx.13013.1.S1_at--805--9931Chr03:14258167..14258191 (25 bp)
TACGTCGACTACTACAATACCGCTT
LOC_Os03g25010
OsAffx.13013.1.S1_at--656--3091Chr03:14258182..14258206 (25 bp)
AATACCGCTTTAGAGATCACCCGTC
LOC_Os03g25010
OsAffx.13013.1.S1_at--73--7111Chr03:14258204..14258336 (25 bp)
GTCACCCTGCCATACATGGGTTCAA
LOC_Os03g25010
Target Sequence 
AAACGACTACAATCAGCCTTTCTTCCAAAACCAATCCTTCATCAATGAGATCAAGCCATTGGTACCAAAAGTTATATCGA
AGATTGAGAACGCTATCAAGGTCCTAATCGACCTAGGAGCCAAGACGATTATTGTTCCAGGAAATTTTCCTATAGGGTGT
GTTCCAGGTTATCTCGGGATATTTCCAAACAAGTTAAGTCCTAAAGACTACGATGTGTTTGGCTGCATAAAGTGGTTGAA
TGACTTCTCCAAGTACCACAACCATGCGCTCAAGCGCATGATGCATCGGATCCCTCACGATCCTACAATCACCATACTCT
ACGTCGACTACTACAATACCGCTTTAGAGATCACCCGTCACCCTGCCATACATGGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis