Browse Element(s) Details


OsAffx.13036.1.S1_at

Description tigr:9631.m02535
TID=OsAffx.13036.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2585011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g25790Os.49475.1.S1_at11/113+14738654..14746592Glycosyl hydrolases family 17 protein, expressed
LOC_Os03g25810OsAffx.13033.1.S1_at11/113+14749796..14750074hypothetical protein
LOC_Os03g25820OsAffx.13034.1.S1_at11/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25820Os.52960.1.S1_x_at1/113+14754331..14755281amino acid permease family protein, putative
LOC_Os03g25830NANA3+14761877..14762146hypothetical protein
LOC_Os03g25840NANA3+14763522..14764514amino acid permease family protein, putative, expressed
LOC_Os03g25850OsAffx.13036.1.S1_at11/113+14767021..14768718expressed protein
LOC_Os03g25850Os.54494.1.S1_at1/113+14767021..14768718expressed protein
LOC_Os03g25869Os.52960.3.S1_at11/113+14768978..14776830expressed protein
LOC_Os03g25869Os.52960.1.S1_x_at11/113+14768978..14776830expressed protein
LOC_Os03g25869OsAffx.13037.1.S1_x_at1/113+14768978..14776830expressed protein
LOC_Os03g25890NANA3+14785418..14789460retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13036.1.S1_at--1160--8351Chr03:14767461..14767485 (25 bp)
GGCGTCCCTCCGAGGATCAAGGCCA
LOC_Os03g25850
OsAffx.13036.1.S1_at--778--7951Chr03:14767448..14767472 (25 bp)
GGATCAAGGCCAAGACGCGGTCGTC
LOC_Os03g25850
OsAffx.13036.1.S1_at--495--4351Chr03:14767337..14767361 (25 bp)
CCACCGGCACGGAGATCTCGGCGTG
LOC_Os03g25850
OsAffx.13036.1.S1_at--861--4491Chr03:14767240..14767264 (25 bp)
GCCGGGCAGGGCGTTCAGCAAGATG
LOC_Os03g25850
OsAffx.13036.1.S1_at--1110--7531Chr03:14767122..14767146 (25 bp)
GGGCTCAAGGCCTGGTTGACCTACC
LOC_Os03g25850
OsAffx.13036.1.S1_at--180--10691Chr03:14767107..14767131 (25 bp)
TTGACCTACCTTCCCAACCAGGTGA
LOC_Os03g25850
OsAffx.13036.1.S1_at--6--9971Chr03:14767101..14767125 (25 bp)
TACCTTCCCAACCAGGTGAGGAGCC
LOC_Os03g25850
OsAffx.13036.1.S1_at--732--7391Chr03:14767086..14767110 (25 bp)
GTGAGGAGCCACCATTTCGAGACGA
LOC_Os03g25850
OsAffx.13036.1.S1_at--286--971Chr03:14767083..14767107 (25 bp)
AGGAGCCACCATTTCGAGACGAGGT
LOC_Os03g25850
OsAffx.13036.1.S1_at--87--3591Chr03:14767074..14767098 (25 bp)
CATTTCGAGACGAGGTGCGTCGAGT
LOC_Os03g25850
OsAffx.13036.1.S1_at--124--6131Chr03:14767053..14767077 (25 bp)
GAGTGGGCACACGAGGTCGACCTCC
LOC_Os03g25850
Target Sequence 
GGCGTCCCTCCGAGGATCAAGGCCAAGACGCGGTCGTCGGCCCGGGCACGCAACCGGAGCTGGCGGTGGGAGCAGGAGGC
GGAGGGCAGCGCCGGCGTGTTCGAGGGCGTGCTGTGCGACCCGGCCACCGGCACGGAGATCTCGGCGTGGCGCGGCGACA
ACAACAACAACAATGGCGGCGCCGGTGACCCGCGCAACGGGATGCGGCGGCGGTACGGCGGGCCGGGCAGGGCGTTCAGC
AAGATGCGGGGGCTGGTGGTGGCCGGCGACGAGCTGCCCGAGGAGGTGACGTGGAGGGTGGGGAGGGAGGCGGAGGGGAG
AACGCTGCCGTGGCGCGTGGGGCTCAAGGCCTGGTTGACCTACCTTCCCAACCAGGTGAGGAGCCACCATTTCGAGACGA
GGTGCGTCGAGTGGGCACACGAGGTCGACCTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13036.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis