Browse Element(s) Details


OsAffx.13042.1.S1_at

Description tigr:9631.m02565
TID=OsAffx.13042.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2612010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26080Os.53762.1.S1_at11/113+14917235..14921065GDA1/CD39 family protein, expressed
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26120OsAffx.13042.1.S1_at10/113+14942489..14943389hypothetical protein
LOC_Os03g26130OsAffx.13043.1.S1_at11/113+14946361..14947502Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13042.1.S1_at--807--2151NONE
ACAGCGCCGCAAGATAGTGGCGGAA
NONE
OsAffx.13042.1.S1_at--203--8671Chr03:14942714..14942738 (25 bp)
TGTGTGGAGTCCACAGGCATCATCG
LOC_Os03g26120
OsAffx.13042.1.S1_at--44--3551Chr03:14942694..14942718 (25 bp)
CATCGATGTTGAACACTGCCGTCAA
LOC_Os03g26120
OsAffx.13042.1.S1_at--842--8971Chr03:14942685..14942709 (25 bp)
TGAACACTGCCGTCAACCTACATCG
LOC_Os03g26120
OsAffx.13042.1.S1_at--507--3311Chr03:14942631..14942655 (25 bp)
CACTACAACCAGCACCGATAAGCAG
LOC_Os03g26120
OsAffx.13042.1.S1_at--180--1511Chr03:14942621..14942645 (25 bp)
AGCACCGATAAGCAGCCTCTGGCTT
LOC_Os03g26120
OsAffx.13042.1.S1_at--699--351Chr03:14942614..14942638 (25 bp)
ATAAGCAGCCTCTGGCTTGGTGGTC
LOC_Os03g26120
OsAffx.13042.1.S1_at--296--8331Chr03:14942586..14942610 (25 bp)
GGCTGCCTTCGACTCTCGGCCAAAT
LOC_Os03g26120
OsAffx.13042.1.S1_at--976--3331Chr03:14942560..14942584 (25 bp)
CAGCTGGCCCTCCAACTAGAAGTGG
LOC_Os03g26120
OsAffx.13042.1.S1_at--124--8411Chr03:14942555..14942579 (25 bp)
GGCCCTCCAACTAGAAGTGGCCGCA
LOC_Os03g26120
OsAffx.13042.1.S1_at--539--5091Chr03:14942527..14942551 (25 bp)
GCACCTGTCATCAACACCTATGACA
LOC_Os03g26120
Target Sequence 
ACAGCGCCGCAAGATAGTGGCGGAAGGTGTGTGGAGTCCACAGGCATCATCGATGTTGAACACTGCCGTCAACCTACATC
GCCACCTAAGCCATGCGTCCCCTCCGTCGCCACTACAACCAGCACCGATAAGCAGCCTCTGGCTTGGTGGTCCGCGGCTG
CCTTCGACTCTCGGCCAAATCCAGCTGGCCCTCCAACTAGAAGTGGCCGCAGCCGCACCTGTCATCAACACCTATGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis