Browse Element(s) Details


OsAffx.13043.1.S1_at

Description tigr:9631.m02566
TID=OsAffx.13043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative transcription factor
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2613011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26090Os.52953.1.S1_at11/113+14925421..14932055GWT1 family protein, expressed
LOC_Os03g26100OsAffx.13041.4.S1_x_at11/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.4.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_at9/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100OsAffx.13041.1.S1_x_at6/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26100Os.28110.1.S1_x_at1/113+14933627..14934301transposon protein, putative, unclassified
LOC_Os03g26120OsAffx.13042.1.S1_at10/113+14942489..14943389hypothetical protein
LOC_Os03g26130OsAffx.13043.1.S1_at11/113+14946361..14947502Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009414biological_processresponse to water deprivation
GO:0009416biological_processresponse to light stimulus
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009626biological_processhypersensitive response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0010118biological_processstomatal movement
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13043.1.S1_at--469--4631Chr03:14946856..14946880 (25 bp)
GCGATGATCAGCAGCGGGCCGCCCG
LOC_Os03g26130
OsAffx.13043.1.S1_at--787--3931Chr03:14946896..14946920 (25 bp)
CGGCGTACGCCCTGAGCGAGCGCAA
LOC_Os03g26130
OsAffx.13043.1.S1_at--1113--8911Chr03:14946908..14946932 (25 bp)
TGAGCGAGCGCAACATCTCCGTGAT
LOC_Os03g26130
OsAffx.13043.1.S1_at--222--2511Chr03:14946919..14946943 (25 bp)
AACATCTCCGTGATGCTGAGCGGCT
LOC_Os03g26130
OsAffx.13043.1.S1_at--636--2091Chr03:14946920..14946944 (25 bp)
ACATCTCCGTGATGCTGAGCGGCTG
LOC_Os03g26130
OsAffx.13043.1.S1_at--524--4211Chr03:14946952..14946976 (25 bp)
CCGCCTCCGGCCAGGAAAGGATTGT
LOC_Os03g26130
OsAffx.13043.1.S1_at--1147--4451Chr03:14946954..14946978 (25 bp)
GCCTCCGGCCAGGAAAGGATTGTCA
LOC_Os03g26130
OsAffx.13043.1.S1_at--444--951Chr03:14946964..14946988 (25 bp)
AGGAAAGGATTGTCAGCCTGCAACC
LOC_Os03g26130
OsAffx.13043.1.S1_at--627--2311Chr03:14946967..14946991 (25 bp)
AAAGGATTGTCAGCCTGCAACCCGG
LOC_Os03g26130
OsAffx.13043.1.S1_at--354--7851Chr03:14946970..14946994 (25 bp)
GGATTGTCAGCCTGCAACCCGGCGG
LOC_Os03g26130
OsAffx.13043.1.S1_at--628--3911Chr03:14947040..14947064 (25 bp)
CGGCCGGGACGTCGTTGGAGCTCAC
LOC_Os03g26130
Target Sequence 
GCGATGATCAGCAGCGGGCCGCCCGCGCCGGCGGCGGCGGCGGCGTACGCCCTGAGCGAGCGCAACATCTCCGTGATGCT
GAGCGGCTGGGCGGCGCCGCCTCCGGCCAGGAAAGGATTGTCAGCCTGCAACCCGGCGGCGGCGACGACGACGCCCGGTG
GCGCCGCCGCGGAGAGCGCGTCCACGGCCGGGACGTCGTTGGAGCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis