Browse Element(s) Details


OsAffx.13047.1.S1_at

Description tigr:9631.m02572
TID=OsAffx.13047.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2619011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26130OsAffx.13043.1.S1_at11/113+14946361..14947502Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed
LOC_Os03g26210Os.9216.1.S1_at11/113+14978830..14980902Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220OsAffx.13048.1.S1_at9/113+14981280..14983325expressed protein
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13047.1.S1_at--908--651Chr03:14971199..14971223 (25 bp)
ATGAAACCCGCTTGGGCTTCATCGT
LOC_Os03g26190
OsAffx.13047.1.S1_at--242--10551Chr03:14971182..14971206 (25 bp)
TTCATCGTGCCGGAGTACTTTGGAG
LOC_Os03g26190
OsAffx.13047.1.S1_at--156--9411Chr03:14971178..14971202 (25 bp)
TCGTGCCGGAGTACTTTGGAGTTCT
LOC_Os03g26190
OsAffx.13047.1.S1_at--781--9171Chr03:14971175..14971199 (25 bp)
TGCCGGAGTACTTTGGAGTTCTGGT
LOC_Os03g26190
OsAffx.13047.1.S1_at--642--9371Chr03:14971148..14971172 (25 bp)
TCGAGATCGTCACCGACGAACGAGC
LOC_Os03g26190
OsAffx.13047.1.S1_at--173--1791Chr03:14971137..14971161 (25 bp)
ACCGACGAACGAGCTCTCTGCATGT
LOC_Os03g26190
OsAffx.13047.1.S1_at--187--1591Chr03:14971126..14971150 (25 bp)
AGCTCTCTGCATGTTCCAGGAGATG
LOC_Os03g26190
OsAffx.13047.1.S1_at--979--3771Chr03:14971122..14971146 (25 bp)
CTCTGCATGTTCCAGGAGATGTTTA
LOC_Os03g26190
OsAffx.13047.1.S1_at--1013--8031Chr03:14971108..14971132 (25 bp)
GGAGATGTTTAAGCTGCCGTCGATT
LOC_Os03g26190
OsAffx.13047.1.S1_at--379--6151Chr03:14971105..14971129 (25 bp)
GATGTTTAAGCTGCCGTCGATTGAA
LOC_Os03g26190
OsAffx.13047.1.S1_at--752--9791Chr03:14971099..14971123 (25 bp)
TAAGCTGCCGTCGATTGAATTGATA
LOC_Os03g26190
Target Sequence 
ATGAAACCCGCTTGGGCTTCATCGTGCCGGAGTACTTTGGAGTTCTGGTGCTCGAGATCGTCACCGACGAACGAGCTCTC
TGCATGTTCCAGGAGATGTTTAAGCTGCCGTCGATTGAATTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13047.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis