Browse Element(s) Details


Os.23168.1.S1_at

Description gb:AK119277.1
DB_XREF= gi:37988900
TID=Os.23168.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23168 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-B10, full insert sequence.
FL= gb:AK119277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2620011/11Methyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26130OsAffx.13043.1.S1_at11/113+14946361..14947502Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed
LOC_Os03g26210Os.9216.1.S1_at11/113+14978830..14980902Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220OsAffx.13048.1.S1_at9/113+14981280..14983325expressed protein
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23168.1.S1_at--1152--5311Chr03:14975632..14975656 (25 bp)
GAAGGGTATGCATCATCTACCTCCT
LOC_Os03g26200
Os.23168.1.S1_at--563--1751Chr03:14975650..14975674 (25 bp)
ACCTCCTCTGTAAACTTATAGCCAC
LOC_Os03g26200
Os.23168.1.S1_at--1120--7111Chr03:14975679..14975703 (25 bp)
GTCAGGAATGAACTCTTGGCAGCTT
LOC_Os03g26200
Os.23168.1.S1_at--532--3611Chr03:14975693..14975717 (25 bp)
CTTGGCAGCTTGAGTTTTCCGAAAA
LOC_Os03g26200
Os.23168.1.S1_at--483--2831Chr03:14975716..14975740 (25 bp)
AAGTTAGCACCCTTGCAATGTGGCC
LOC_Os03g26200
Os.23168.1.S1_at--816--791Chr03:14975733..14975757 (25 bp)
ATGTGGCCTTGCCAGTTCTTTTCAA
LOC_Os03g26200
Os.23168.1.S1_at--684--411Chr03:14975781..14975805 (25 bp)
ATCTTTTTCAAAACCGGCTGCCTCA
LOC_Os03g26200
Os.23168.1.S1_at--1040--911Chr03:14975877..14975901 (25 bp)
AGGCTTGTCATGACCGTATTTCTTT
LOC_Os03g26200
Os.23168.1.S1_at--933--7151Chr03:14975913..14975937 (25 bp)
GTCTAGCCTTAGCTGGTGCGACAAT
LOC_Os03g26200
Os.23168.1.S1_at--431--2391Chr03:14975950..14975974 (25 bp)
AAACTGGCCTCTAATCTTGCTTGTT
LOC_Os03g26200
Os.23168.1.S1_at--592--6211Chr03:14976144..14976168 (25 bp)
GAGGCTGTCCTTTTGAGATTCAGTT
LOC_Os03g26200
Target Sequence 
GAAGGGTATGCATCATCTACCTCCTCTGTAAACTTATAGCCACTGTAGTCAGGAATGAACTCTTGGCAGCTTGAGTTTTC
CGAAAAGTTAGCACCCTTGCAATGTGGCCTTGCCAGTTCTTTTCAAGGTAAATTGCACTGCAGGTATAAATCTTTTTCAA
AACCGGCTGCCTCAGTCTTGACAATCTCAACCACAGGTTTCATCTTTTGATGTAAATGGCTTGGATTTGAAAGTTCATGT
ATGCAAGGCTTGTCATGACCGTATTTCTTTTANCNAGTTTTGTCTAGCCTTAGCTGGTGCGACAATTTGAGAATGCTCAA
ACTGGCCTCTAATCTTGCTTGTTTGGTGCATTTGTGNTCTAAGGAGGTGTCGCACTGTAATGAAACTGAGATCCATAAGA
TTCTAGTATTCTGATCGTCTGAACCGAGGTGNCCAATAATCAAATTTAGCTACGTATGTAATAGTTTTTTTTCTGTTGGT
AACAGACGAACGATTTATTTTTANTGCTATTTGAGGCTGTCCTTTTGAGATTCAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis