Browse Element(s) Details


Os.9216.1.S1_at

Description gb:AK068704.1
DB_XREF= gi:32978721
TID=Os.9216.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159M16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159M16, full insert sequence.
FL= gb:AK061515.1 gb:AK068704.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2621011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed
LOC_Os03g26210Os.9216.1.S1_at11/113+14978830..14980902Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220OsAffx.13048.1.S1_at9/113+14981280..14983325expressed protein
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9216.1.S1_at--306--471Chr03:14980379..14980403 (25 bp)
ATCTCCCATGACAACAAGCACAGTG
LOC_Os03g26210
Os.9216.1.S1_at--537--2491Chr03:14980433..14980457 (25 bp)
AACAGTCATTGAGCCCTCTGCAAGA
LOC_Os03g26210
Os.9216.1.S1_at--731--5451Chr03:14980467..14980491 (25 bp)
GAACTGAAGCTCTTCCTAGAAGCAC
LOC_Os03g26210
Os.9216.1.S1_at--222--6211Chr03:14980527..14980551 (25 bp)
GAGGCTCCGAACAATGTGGCACGAC
LOC_Os03g26210
Os.9216.1.S1_at--845--6151Chr03:14980559..14980583 (25 bp)
GAGGTACCCAACAGAGGCATCTTCT
LOC_Os03g26210
Os.9216.1.S1_at--274--1331Chr03:14980571..14980595 (25 bp)
AGAGGCATCTTCTTGGCCTATTAGC
LOC_Os03g26210
Os.9216.1.S1_at--733--4451Chr03:14980586..14980610 (25 bp)
GCCTATTAGCCTGGGACTTCCAAGA
LOC_Os03g26210
Os.9216.1.S1_at--970--1331Chr03:14980668..14980692 (25 bp)
AGAGGGTCTGTTTTTAATGCATGCA
LOC_Os03g26210
Os.9216.1.S1_at--584--5531Chr03:14980705..14980729 (25 bp)
GAAAACACTTCTGTCCTTGCATGAA
LOC_Os03g26210
Os.9216.1.S1_at--620--10271Chr03:14980740..14980764 (25 bp)
TTTCCTGCATTCCAAGTAAGACCTG
LOC_Os03g26210
Os.9216.1.S1_at--106--6092Chr03:14980764..14980788 (25 bp)
GAGTAGATCAGCTCCAACCAATCAG
LOC_Os03g26210
Target Sequence 
ATCTCCCATGACAACAAGCACAGTGTTCCCCTTGCAGCAGCCACTGCCACAACCAACAGTCATTGAGCCCTCTGCAAGAC
AGCCACTGGAACTGAAGCTCTTCCTAGAAGCACCCCCCGCCGAAGACCCTGAACCATCAGAAGACCAGGAGGCTCCGAAC
AATGTGGCACGACCGCAGCCGAGGTACCCAACAGAGGCATCTTCTTGGCCTATTAGCCTGGGACTTCCAAGAATGGAAGA
TGAGCAAATGTAGTGGTAGCACGATAGATGATAGCACAGGTAGAGATTGAGAGGGTCTGTTTTTAATGCATGCAGGAATT
CCACACGAAAACACTTCTGTCCTTGCATGAAAACTGGAAAATTTCCTGCATTCCAAGTAAGACCTGAGTAGATCAGCTCC
AACCAATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis