Browse Element(s) Details


OsAffx.13048.1.S1_at

Description tigr:9631.m02576
TID=OsAffx.13048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative mucin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g262209/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed
LOC_Os03g26210Os.9216.1.S1_at11/113+14978830..14980902Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220OsAffx.13048.1.S1_at9/113+14981280..14983325expressed protein
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13048.1.S1_at--1032--5711NONE
GACTCGTGCTCTGAGATTTTCGATT
NONE
OsAffx.13048.1.S1_at--157--6571Chr03:14981703..14981727 (25 bp)
GATTCAAAGATTCCAAGCACTGCTG
LOC_Os03g26220
OsAffx.13048.1.S1_at--893--6611Chr03:14981657..14981681 (25 bp)
GTTGGGAAACCACCTCTAGAGGACA
LOC_Os03g26220
OsAffx.13048.1.S1_at--235--271Chr03:14981622..14981646 (25 bp)
ATATGGGATATCTCACAGCGGGAAG
LOC_Os03g26220
OsAffx.13048.1.S1_at--475--2931Chr03:14981572..14981596 (25 bp)
AAGGCGGATTGCTTTCAGTAAACAG
LOC_Os03g26220
OsAffx.13048.1.S1_at--296--2151NONE
ACAGCAGATTGCTAGCTTCATCAAA
NONE
OsAffx.13048.1.S1_at--557--2471Chr03:14981448..14981472 (25 bp)
AACACACATATTTAGCCGGAGGCGT
LOC_Os03g26220
OsAffx.13048.1.S1_at--200--8091Chr03:14981362..14981386 (25 bp)
GGAGCGTACAGAGACTGCCCAGTGT
LOC_Os03g26220
OsAffx.13048.1.S1_at--301--9171Chr03:14981347..14981371 (25 bp)
TGCCCAGTGTGACTGATCCTGCTAC
LOC_Os03g26220
OsAffx.13048.1.S1_at--331--9091Chr03:14981328..14981352 (25 bp)
TGCTACTCAGCCGTACAGGGAAGAG
LOC_Os03g26220
OsAffx.13048.1.S1_at--794--7611Chr03:14981311..14981335 (25 bp)
GGGAAGAGCCACCTGCAATTGCATC
LOC_Os03g26220
Target Sequence 
GACTCGTGCTCTGAGATTTTCGATTCTGGAAATACAGATTTTGGCGATTCAAAGATTCCAAGCACTGCTGAGATCAAAAC
CAAGCCTGATGGTTGGGAAACCACCTCTAGAGGACAGGATGGTAGCATATGGGATATCTCACAGCGGGAAGATGACATTC
TTCTCCAAGAATTCGAAAGGCGGATTGCTTTCAGTAAACAGCAGATTGCTAGCTTCATCAAAACACACATATTTAGCCGG
AGGCGTCCTATTGACGGATGGAAGTACATGATCGAAGAAATTGGCCCTAATGCTAGAAAAGGGAAGGGGAGCGTACAGAG
ACTGCCCAGTGTGACTGATCCTGCTACTCAGCCGTACAGGGAAGAGCCACCTGCAATTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis