Browse Element(s) Details


OsAffx.25233.1.S1_at

Description tigr:9631.m02578
TID=OsAffx.25233.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2624011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26180NANA3+14967001..14967447hypothetical protein
LOC_Os03g26190OsAffx.13047.1.S1_at11/113+14971069..14971435hypothetical protein
LOC_Os03g26200Os.23168.1.S1_at11/113+14971776..14976168Methyltransferase, putative, expressed
LOC_Os03g26210Os.9216.1.S1_at11/113+14978830..14980902Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220OsAffx.13048.1.S1_at9/113+14981280..14983325expressed protein
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26280OsAffx.13050.1.S1_at11/113+15008456..15009721expressed protein
LOC_Os03g26280OsAffx.7632.1.S1_at1/113+15008456..15009721expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25233.1.S1_at--272--5591Chr03:14987720..14987744 (25 bp)
GAAATGCAAGATACACCTTTGGCTA
LOC_Os03g26240
OsAffx.25233.1.S1_at--212--331Chr03:14987710..14987734 (25 bp)
ATACACCTTTGGCTAACAATGTCAG
LOC_Os03g26240
OsAffx.25233.1.S1_at--307--2211Chr03:14987695..14987719 (25 bp)
ACAATGTCAGGTTAGTCAATTTTCA
LOC_Os03g26240
OsAffx.25233.1.S1_at--742--171Chr03:14987677..14987701 (25 bp)
ATTTTCATGTTACTATTGCCCTCCT
LOC_Os03g26240
OsAffx.25233.1.S1_at--193--9631Chr03:14987673..14987697 (25 bp)
TCATGTTACTATTGCCCTCCTGCAT
LOC_Os03g26240
OsAffx.25233.1.S1_at--242--4291Chr03:14987658..14987682 (25 bp)
CCTCCTGCATCCTTATCTTTGGAGA
LOC_Os03g26240
OsAffx.25233.1.S1_at--1019--3531Chr03:14987651..14987675 (25 bp)
CATCCTTATCTTTGGAGAGTTCCTT
LOC_Os03g26240
OsAffx.25233.1.S1_at--600--8051Chr03:14987638..14987662 (25 bp)
GGAGAGTTCCTTATCTTCTCTATCG
LOC_Os03g26240
OsAffx.25233.1.S1_at--464--7911Chr03:14987598..14987622 (25 bp)
GGTTGAGGGTCATTGCCAAGCGCTA
LOC_Os03g26240
OsAffx.25233.1.S1_at--1128--7691Chr03:14987592..14987616 (25 bp)
GGGTCATTGCCAAGCGCTACTGGCT
LOC_Os03g26240
OsAffx.25233.1.S1_at--460--1651Chr03:14987580..14987604 (25 bp)
AGCGCTACTGGCTCTAGGTTTAGAG
LOC_Os03g26240
Target Sequence 
GAAATGCAAGATACACCTTTGGCTAACAATGTCAGGTTAGTCAATTTTCATGTTACTATTGCCCTCCTGCATCCTTATCT
TTGGAGAGTTCCTTATCTTCTCTATCGACAAGACGGGGTAAGGGTTGAGGGTCATTGCCAAGCGCTACTGGCTCTAGGTT
TAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25233.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis