Browse Element(s) Details


OsAffx.13050.1.S1_at

Description tigr:9631.m02582
TID=OsAffx.13050.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2628011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26229Os.7213.1.S1_at2/113+14984751..1498671140S ribosomal protein S9, putative
LOC_Os03g26240OsAffx.25233.1.S1_at11/113+14987517..14988215hypothetical protein
LOC_Os03g26250OsAffx.3331.1.S1_at11/113+14989924..14990498hypothetical protein
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26280OsAffx.13050.1.S1_at11/113+15008456..15009721expressed protein
LOC_Os03g26280OsAffx.7632.1.S1_at1/113+15008456..15009721expressed protein
LOC_Os03g26290NANA3+15013482..15017559retrotransposon protein, putative, unclassified
LOC_Os03g26300NANA3+15018079..15018618Zinc finger, C3HC4 type family protein
LOC_Os03g26310OsAffx.25235.1.S1_at11/113+15020297..15021160expressed protein
LOC_Os03g26329Os.24831.3.S1_x_at6/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.1.S1_x_at5/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.49936.2.A1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.52311.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.53142.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.1.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.3.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.22945.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.23706.1.A1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.3.S1_s_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13050.1.S1_at--420--1491Chr03:15008486..15008510 (25 bp)
AGCAACATCACCTTGCGGGAGGCAA
LOC_Os03g26280
OsAffx.13050.1.S1_at--71--3251Chr03:15008488..15008512 (25 bp)
CAACATCACCTTGCGGGAGGCAACG
LOC_Os03g26280
OsAffx.13050.1.S1_at--1048--371Chr03:15008492..15008516 (25 bp)
ATCACCTTGCGGGAGGCAACGAGGG
LOC_Os03g26280
OsAffx.13050.1.S1_at--419--8491Chr03:15008535..15008559 (25 bp)
TGGCTGATGTGGATCCAGCCGTCGA
LOC_Os03g26280
OsAffx.13050.1.S1_at--814--6251Chr03:15008540..15008564 (25 bp)
GATGTGGATCCAGCCGTCGAGGTTT
LOC_Os03g26280
OsAffx.13050.1.S1_at--1105--8551Chr03:15008544..15008568 (25 bp)
TGGATCCAGCCGTCGAGGTTTGCCG
LOC_Os03g26280
OsAffx.13050.1.S1_at--895--6331Chr03:15008546..15008570 (25 bp)
GATCCAGCCGTCGAGGTTTGCCGGC
LOC_Os03g26280
OsAffx.13050.1.S1_at--489--4351Chr03:15008549..15008573 (25 bp)
CCAGCCGTCGAGGTTTGCCGGCGTT
LOC_Os03g26280
OsAffx.13050.1.S1_at--698--1011Chr03:15008559..15008583 (25 bp)
AGGTTTGCCGGCGTTGTGAGGATGG
LOC_Os03g26280
OsAffx.13050.1.S1_at--856--7611Chr03:15008583..15008607 (25 bp)
GGGACATGCGCGAGGAGAAGCTCCA
LOC_Os03g26280
OsAffx.13050.1.S1_at--1161--6011Chr03:15008613..15008637 (25 bp)
GAGAGGAAGAGCTTGCCGGCAGTGC
LOC_Os03g26280
Target Sequence 
AGCAACATCACCTTGCGGGAGGCAACGAGGGGACGACGAGCGCCGGCGGTGGCTGATGTGGATCCAGCCGTCGAGGTTTG
CCGGCGTTGTGAGGATGGGGACATGCGCGAGGAGAAGCTCCACCGCGGAGAGGAAGAGCTTGCCGGCAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13050.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis