Browse Element(s) Details


OsAffx.25235.1.S1_at

Description tigr:9631.m02585
TID=OsAffx.25235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2631011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26260OsAffx.13049.1.S1_at11/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26260OsAffx.22180.1.S1_at1/113+14994568..15002067NB-ARC domain containing protein
LOC_Os03g26280OsAffx.13050.1.S1_at11/113+15008456..15009721expressed protein
LOC_Os03g26280OsAffx.7632.1.S1_at1/113+15008456..15009721expressed protein
LOC_Os03g26290NANA3+15013482..15017559retrotransposon protein, putative, unclassified
LOC_Os03g26300NANA3+15018079..15018618Zinc finger, C3HC4 type family protein
LOC_Os03g26310OsAffx.25235.1.S1_at11/113+15020297..15021160expressed protein
LOC_Os03g26329Os.24831.3.S1_x_at6/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.1.S1_x_at5/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.4.S1_x_at4/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.49936.2.A1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.52311.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.53142.1.S1_at3/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.20823.2.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.1.S1_x_at2/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.29757.3.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.22945.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.23706.1.A1_x_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329Os.24831.3.S1_s_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26329OsAffx.1651.1.S1_at1/113+15024826..15035679retrotransposon protein, putative, unclassified
LOC_Os03g26350NANA3+15042954..15049278transposon protein, putative, CACTA, En/Spm sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25235.1.S1_at--672--4791Chr03:15020844..15020868 (25 bp)
GCTCCGCCGGGAAACTGCAGGTGCT
LOC_Os03g26310
OsAffx.25235.1.S1_at--57--1291Chr03:15020740..15020764 (25 bp)
AGATCGCGAATCTGCGTCCTCTCCA
LOC_Os03g26310
OsAffx.25235.1.S1_at--685--6131Chr03:15020597..15020621 (25 bp)
GAGGGTCAGCCTGGTTATGTGGGAC
LOC_Os03g26310
OsAffx.25235.1.S1_at--752--4131Chr03:15020560..15020584 (25 bp)
CGCGACCTGTCGAGGACGTTCACGT
LOC_Os03g26310
OsAffx.25235.1.S1_at--1021--3871Chr03:15020554..15020578 (25 bp)
CTGTCGAGGACGTTCACGTCGGAGA
LOC_Os03g26310
OsAffx.25235.1.S1_at--307--10511Chr03:15020542..15020566 (25 bp)
TTCACGTCGGAGACCCAGGTGGAGG
LOC_Os03g26310
OsAffx.25235.1.S1_at--165--4071Chr03:15020495..15020519 (25 bp)
CGAGGAGGTGATCGTCCGCAACGGC
LOC_Os03g26310
OsAffx.25235.1.S1_at--612--7511Chr03:15020435..15020459 (25 bp)
GTGGTTGTGGGTGCGCGGCATCTCC
LOC_Os03g26310
OsAffx.25235.1.S1_at--764--3391Chr03:15020411..15020435 (25 bp)
CAGCTCGGGTGGTCCTGTACTGGAT
LOC_Os03g26310
OsAffx.25235.1.S1_at--389--9271Chr03:15020399..15020423 (25 bp)
TCCTGTACTGGATGTGGCGCTGCTG
LOC_Os03g26310
OsAffx.25235.1.S1_at--259--8471Chr03:15020376..15020400 (25 bp)
TGGCGCACCGGGACAGCGTCGTACA
LOC_Os03g26310
Target Sequence 
GCTCCGCCGGGAAACTGCAGGTGCTCGTGTTCGAGCGGGCGCGCGAGAGGTTCCGGCTGATGGATGCGCCGCCGCGCCGC
CGTGGCGAGGAAGAAGACATGGCGAGATCGCGAATCTGCGTCCTCTCCAGCGGCAAGCTCTGCGCCGTGGCCGTCGCTCG
GGCGACGAGCACGATGGAGATGTGGGTGCTCGACGACTACCACCACTGCTCCGACGACGCGCGGATCAGCGGCTGGCGGC
TGATGGAGAGGGTCAGCCTGGTTATGTGGGACGGGGACGGGCGGCGCGACCTGTCGAGGACGTTCACGTCGGAGACCCAG
GTGGAGGCGGTGCACGGCGAGGTGGAGGGCGAGGAGGTGATCGTCCGCAACGGCGGCGAGGTCGACGCGTACAGCCTCCG
GCGCGGAGCGTGGTTGTGGGTGCGCGGCATCTCCAGCTCGGGTGGTCCTGTACTGGATGTGGCGCTGCTGGCGCACCGGG
ACAGCGTCGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis