Browse Element(s) Details

OsAffx.13049.1.S1_at

Description

tigr:9631.m02580
TID=OsAffx.13049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative disease resistance gene
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g26260	11/11	NB-ARC domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g26190	OsAffx.13047.1.S1_at	11/11	3	+	14971069..14971435	hypothetical protein
LOC_Os03g26200	Os.23168.1.S1_at	11/11	3	+	14971776..14976168	Methyltransferase, putative, expressed
LOC_Os03g26210	Os.9216.1.S1_at	11/11	3	+	14978830..14980902	Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g26220	OsAffx.13048.1.S1_at	9/11	3	+	14981280..14983325	expressed protein
LOC_Os03g26229	Os.7213.1.S1_at	2/11	3	+	14984751..14986711	40S ribosomal protein S9, putative
LOC_Os03g26240	OsAffx.25233.1.S1_at	11/11	3	+	14987517..14988215	hypothetical protein
LOC_Os03g26250	OsAffx.3331.1.S1_at	11/11	3	+	14989924..14990498	hypothetical protein
LOC_Os03g26260	OsAffx.13049.1.S1_at	11/11	3	+	14994568..15002067	NB-ARC domain containing protein
LOC_Os03g26260	OsAffx.22180.1.S1_at	1/11	3	+	14994568..15002067	NB-ARC domain containing protein
LOC_Os03g26280	OsAffx.13050.1.S1_at	11/11	3	+	15008456..15009721	expressed protein
LOC_Os03g26280	OsAffx.7632.1.S1_at	1/11	3	+	15008456..15009721	expressed protein
LOC_Os03g26290	NA	NA	3	+	15013482..15017559	retrotransposon protein, putative, unclassified
LOC_Os03g26300	NA	NA	3	+	15018079..15018618	Zinc finger, C3HC4 type family protein
LOC_Os03g26310	OsAffx.25235.1.S1_at	11/11	3	+	15020297..15021160	expressed protein
LOC_Os03g26329	Os.24831.3.S1_x_at	6/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	Os.24831.1.S1_x_at	5/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.29757.4.S1_x_at	4/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	Os.24831.4.S1_x_at	4/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	Os.49936.2.A1_at	3/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	Os.52311.1.S1_at	3/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	Os.53142.1.S1_at	3/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.20823.2.S1_at	2/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.20823.2.S1_x_at	2/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.29757.1.S1_x_at	2/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.29757.3.S1_x_at	1/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.1651.1.S1_x_at	1/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.22945.1.S1_at	1/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	Os.23706.1.A1_x_at	1/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	Os.24831.3.S1_s_at	1/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified
LOC_Os03g26329	OsAffx.1651.1.S1_at	1/11	3	+	15024826..15035679	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.13049.1.S1_at--1021--495	1	Chr03:15001467..15001491 (25 bp)	GCATATGCAGACACTTGACTCAATA	LOC_Os03g26260
OsAffx.13049.1.S1_at--257--311	1	Chr03:15001582..15001606 (25 bp)	AATATGGAGGCTTTGTTTGCTGCTC	LOC_Os03g26260
OsAffx.13049.1.S1_at--205--441	1	Chr03:15001646..15001670 (25 bp)	GCCACATTATTCCATCAACCGTGTT	LOC_Os03g26260
OsAffx.13049.1.S1_at--315--263	1	Chr03:15001662..15001686 (25 bp)	AACCGTGTTCATCACAATCTCGCTT	LOC_Os03g26260
OsAffx.13049.1.S1_at--1032--855	1	Chr03:15001748..15001772 (25 bp)	TGGATGTATGCCTTCCTAATCTCAG	LOC_Os03g26260
OsAffx.13049.1.S1_at--1--977	1	Chr03:15001764..15001788 (25 bp)	TAATCTCAGCATGCTTTCATTGGAG	LOC_Os03g26260
OsAffx.13049.1.S1_at--825--961	1	Chr03:15001803..15001827 (25 bp)	TCAGGGATTCATTTCAAAGCTTGCT	LOC_Os03g26260
OsAffx.13049.1.S1_at--1091--1069	1	Chr03:15001823..15001847 (25 bp)	TTGCTGAACTCCCATCTCTTGAAAC	LOC_Os03g26260
OsAffx.13049.1.S1_at--689--555	1	Chr03:15001843..15001867 (25 bp)	GAAACCCTTGCCTTATATTCTGAGT	LOC_Os03g26260
OsAffx.13049.1.S1_at--200--519	1	Chr03:15001968..15001992 (25 bp)	GCAAGGTGCGCTTCATATTCTCAAG	LOC_Os03g26260
OsAffx.13049.1.S1_at--464--971	1	Chr03:15002010..15002034 (25 bp)	TCAACGTCCCCATGTCAAAATCATT	LOC_Os03g26260

Target Sequence

GCATATGCAGACACTTGACTCAATAGAGCTTGACAACTGTGAGAAGGATTTGATTGGGACAGTTGGAAAGATGGTCCATC
TAGAAAATTTATTTGTTTGGAACATTACAACTGGTAATATGGAGGCTTTGTTTGCTGCTCTGAGCAAGCTAGAGAATCTT
AGGAATTTGGCCTTGCATGGCCACATTATTCCATCAACCGTGTTCATCACAATCTCGCTTCGCCGCCTCAAGTCCATGAA
GTTACAAGGGAAACTAAAATTTTTATATGAGATAACTGGTATGGATGTATGCCTTCCTAATCTCAGCATGCTTTCATTGG
AGAAAACAAAGGTATCTCAGGGATTCATTTCAAAGCTTGCTGAACTCCCATCTCTTGAAACCCTTGCCTTATATTCTGAG
TCATACAAGGACGAGCATCTTTTATTCTCTTCAATTGGATTTGTTAGTCTGAAGAAGATCAAGCTTGATGTACCAACAAC
GCTGAAAACTATTGAGATAGAGCAAGGTGCGCTTCATATTCTCAAGGAATTTGATATTCTCTCTCAACGTCCCCATGTCA
AAATCATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis