Browse Element(s) Details


OsAffx.13053.1.S1_at

Description tigr:9631.m02595
TID=OsAffx.13053.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2642011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26360OsAffx.13052.1.S1_at11/113+15049574..15054050expressed protein
LOC_Os03g26360Os.23302.1.A1_at11/113+15049574..15054050expressed protein
LOC_Os03g26360OsAffx.13052.2.S1_at2/113+15049574..15054050expressed protein
LOC_Os03g26370NANA3+15054822..15055388Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g26380Os.14919.1.S1_at5/113+15056464..15059399hypothetical protein
LOC_Os03g26380Os.56216.1.S1_at2/113+15056464..15059399hypothetical protein
LOC_Os03g26390NANA3+15060630..15066767retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26400OsAffx.21897.5.S1_x_at4/113+15067056..15069980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein
LOC_Os03g26430Os.11373.1.S1_at11/113+15079319..15081192Aldose 1-epimerase family protein, expressed
LOC_Os03g26440OsAffx.13054.1.S1_at11/113+15085399..15092373tRNA pseudouridine synthase A family protein
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13053.1.S1_at--1001--5811Chr03:15075972..15075996 (25 bp)
GACCTACTCGCATCGCTTCTTCAGT
LOC_Os03g26420
OsAffx.13053.1.S1_at--600--4071Chr03:15076022..15076046 (25 bp)
CGACATCCTATCGTTCGCGAATCAG
LOC_Os03g26420
OsAffx.13053.1.S1_at--687--511Chr03:15076031..15076055 (25 bp)
ATCGTTCGCGAATCAGCTGGCCAGG
LOC_Os03g26420
OsAffx.13053.1.S1_at--1095--6691Chr03:15076067..15076091 (25 bp)
GTTCCTCCAAGACTCCAACGACATA
LOC_Os03g26420
OsAffx.13053.1.S1_at--961--3251Chr03:15076082..15076106 (25 bp)
CAACGACATACTGGCATCGCTTCTG
LOC_Os03g26420
OsAffx.13053.1.S1_at--1032--311Chr03:15076089..15076113 (25 bp)
ATACTGGCATCGCTTCTGCAGTCCA
LOC_Os03g26420
OsAffx.13053.1.S1_at--580--2631Chr03:15076236..15076260 (25 bp)
AACCACGACGATCCGTCAGCGTCGG
LOC_Os03g26420
OsAffx.13053.1.S1_at--265--4791Chr03:15076421..15076445 (25 bp)
GCTCCTGCTGATAGCGCGCGTACGC
LOC_Os03g26420
OsAffx.13053.1.S1_at--654--1931Chr03:15076456..15076480 (25 bp)
ACGGCGGCAATGAAGAGGAGCATTA
LOC_Os03g26420
OsAffx.13053.1.S1_at--856--5911Chr03:15076473..15076497 (25 bp)
GAGCATTACCATTACTATCTTTACG
LOC_Os03g26420
OsAffx.13053.1.S1_at--491--3691Chr03:15076487..15076511 (25 bp)
CTATCTTTACGAAATACGAGTACAG
LOC_Os03g26420
Target Sequence 
GACCTACTCGCATCGCTTCTTCAGTCCACCTCGCGCGGCGGCGGCGGCGCCGACATCCTATCGTTCGCGAATCAGCTGGC
CAGGCAAGCCGGCGCGTTCCTCCAAGACTCCAACGACATACTGGCATCGCTTCTGCAGTCCACCTCGCGCGGCGCTTCCG
CTGGCGCCGCCGCCGCCTCGGACGAGGCGATCCAGGCGCTCAAGGACGTGGGCGGCGGCGACGTCGACGGCGGCGGGCAG
AAGCTGGACTGCGCGATCTGCCTCAACCACGACGATCCGTCAGCGTCGGCGGCGGCGGGGTGGAAGGAGATGCCGTGCGG
GCACCGGTTCCACGGCGGGTGCCTGGAGAAGTGGCTGCGCATGCACGGCACGTGCCCCATGTGCCGCCACCAGATGCCGG
CGGCGGAGGTGGTGGAGGGGGCGGCTTCGGAGGTGACCACGTCGGAGCCGCTCCTGCTGATAGCGCGCGTACGCCGCTCC
GGCGACGGCGGCAATGAAGAGGAGCATTACCATTACTATCTTTACGAAATACGAGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13053.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis