Browse Element(s) Details


OsAffx.13055.1.S1_at

Description tigr:9631.m02600
TID=OsAffx.13055.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2647011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26420OsAffx.13053.1.S1_at11/113+15075879..15076541Zinc finger, C3HC4 type family protein
LOC_Os03g26430Os.11373.1.S1_at11/113+15079319..15081192Aldose 1-epimerase family protein, expressed
LOC_Os03g26440OsAffx.13054.1.S1_at11/113+15085399..15092373tRNA pseudouridine synthase A family protein
LOC_Os03g26450Os.15764.1.S1_at11/113+15093858..15097099F-actin capping protein beta subunit, putative, expressed
LOC_Os03g26460Os.6724.1.S1_at11/113+15097190..15100288expressed protein
LOC_Os03g26460Os.40390.1.A1_x_at1/113+15097190..15100288expressed protein
LOC_Os03g26470OsAffx.13055.1.S1_at11/113+15100623..15101070hypothetical protein
LOC_Os03g26480OsAffx.13056.1.S1_at11/113+15103183..15105820hypothetical protein
LOC_Os03g26490Os.55461.1.S1_at11/113+15106015..15107011expressed protein
LOC_Os03g26500OsAffx.3335.1.S1_at11/113+15110150..15111064expressed protein
LOC_Os03g26510OsAffx.13057.1.S1_at11/113+15117442..15117708hypothetical protein
LOC_Os03g26520OsAffx.13058.1.S1_at11/113+15125408..15126146hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13055.1.S1_at--1049--7871Chr03:15100659..15100683 (25 bp)
GGTTATGCGCCAATGGCGGTTTGTT
LOC_Os03g26470
OsAffx.13055.1.S1_at--747--6212Chr07:99920..100134 (25 bp)
GAGGCGTTGTCTAGAAGGTCTGCAA
NONE
OsAffx.13055.1.S1_at--325--10811Chr03:15100921..15100945 (25 bp)
TTGTCTAGAAGGTCTGCAATCAGTT
LOC_Os03g26470
OsAffx.13055.1.S1_at--494--6613Chr03:15100943..15100967 (25 bp)
GTTGGATGGTGAAGGGTGTGACCCC
LOC_Os03g26470
OsAffx.13055.1.S1_at--254--6831Chr03:15100958..15100982 (25 bp)
GTGTGACCCCCGAGGTTCTTGGAGT
LOC_Os03g26470
OsAffx.13055.1.S1_at--533--4031Chr03:15100968..15100992 (25 bp)
CGAGGTTCTTGGAGTTTGGGTTCAG
LOC_Os03g26470
OsAffx.13055.1.S1_at--1102--10511Chr03:15100988..15101012 (25 bp)
TTCAGCTGGTTCGAGTTGGTGCTCG
LOC_Os03g26470
OsAffx.13055.1.S1_at--96--4731Chr03:15100992..15101016 (25 bp)
GCTGGTTCGAGTTGGTGCTCGACAA
LOC_Os03g26470
OsAffx.13055.1.S1_at--1155--1231Chr03:15101001..15101025 (25 bp)
AGTTGGTGCTCGACAATATGGTTGT
LOC_Os03g26470
OsAffx.13055.1.S1_at--952--4791Chr03:15101008..15101032 (25 bp)
GCTCGACAATATGGTTGTGGCTCAT
LOC_Os03g26470
OsAffx.13055.1.S1_at--577--271Chr03:15101016..15101040 (25 bp)
ATATGGTTGTGGCTCATTCTTAGGA
LOC_Os03g26470
Target Sequence 
GGTTATGCGCCAATGGCGGTTTGTTGGTTGTGGGGTGTTAGAGCTATGAGCAAAGGGGAGGCGTTGTCTAGAAGGTCTGC
AATCAGTTGGATGGTGAAGGGTGTGACCCCCGAGGTTCTTGGAGTTTGGGTTCAGCTGGTTCGAGTTGGTGCTCGACAAT
ATGGTTGTGGCTCATTCTTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis