Browse Element(s) Details


OsAffx.13087.1.S1_at

Description tigr:9631.m02770
TID=OsAffx.13087.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2800010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g28000OsAffx.13087.1.S1_at10/113+16066758..16067252hypothetical protein
LOC_Os03g28010Os.7307.3.S1_x_at4/113+16072033..16081962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g28020Os.7307.3.S1_x_at1/113+16083440..16087442transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13087.1.S1_at--530--2151NONE
ACAGCTCTCGGCGACAGCGAAGATC
NONE
OsAffx.13087.1.S1_at--372--1591Chr03:16067201..16067220 (20 bp)
AGCTCTCGGCGACAGCGAAGATCTA
LOC_Os03g28000
OsAffx.13087.1.S1_at--739--3771Chr03:16066819..16067218 (25 bp)
CTCTCGGCGACAGCGAAGATCTAGC
LOC_Os03g28000
OsAffx.13087.1.S1_at--1016--2151Chr03:16067011..16067209 (25 bp)
ACAGCGAAGATCTAGCCGGAAGGGA
LOC_Os03g28000
OsAffx.13087.1.S1_at--426--2811Chr03:16067005..16067028 (24 bp)
AAGATCTAGCCGGAAGGGAGGGAGC
LOC_Os03g28000
OsAffx.13087.1.S1_at--727--6291Chr03:16066965..16066989 (25 bp)
GATGATGGTAGCAAGCGGTGGCGGA
LOC_Os03g28000
OsAffx.13087.1.S1_at--1034--6391Chr03:16066942..16066966 (25 bp)
GATCTGACGACAGGGTCGGCGGCAC
LOC_Os03g28000
OsAffx.13087.1.S1_at--264--3951Chr03:16066923..16066947 (25 bp)
CGGCACCAGGGCAACCGTGACGACG
LOC_Os03g28000
OsAffx.13087.1.S1_at--173--5791Chr03:16066899..16066923 (25 bp)
GACGACCGTGACTGCGGCGATGACA
LOC_Os03g28000
OsAffx.13087.1.S1_at--858--1851Chr03:16066898..16066922 (25 bp)
ACGACCGTGACTGCGGCGATGACAA
LOC_Os03g28000
OsAffx.13087.1.S1_at--578--9311Chr03:16066813..16066837 (25 bp)
TCCCTATCCCAGATCTAGCCAAAGG
LOC_Os03g28000
Target Sequence 
ACAGCTCTCGGCGACAGCGAAGATCTAGCCGGAAGGGAGGGAGCGGCGGCGACCGTGGCGATGATGGTAGCAAGCGGTGG
CGGATCTGACGACAGGGTCGGCGGCACCAGGGCAACCGTGACGACGACGACCGTGACTGCGGCGATGACAACGATGATGC
TGCGCGCTGGCGGGGAGCACGGATCTGGCGGCTCCTTCCCTCCCCTCCTTCTCCCTATCCCAGATCTAGCCAAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis