Browse Element(s) Details


OsAffx.25262.1.S1_at

Description tigr:9631.m02768
TID=OsAffx.25262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative 1,3-beta-glucanase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2798011/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g28000OsAffx.13087.1.S1_at10/113+16066758..16067252hypothetical protein
LOC_Os03g28010Os.7307.3.S1_x_at4/113+16072033..16081962transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25262.1.S1_at--388--8351Chr03:16050692..16050716 (25 bp)
GGCGGCCGCAGATGCCCGACGTCTA
LOC_Os03g27980
OsAffx.25262.1.S1_at--795--1291Chr03:16050701..16050725 (25 bp)
AGATGCCCGACGTCTACGTGTTCGC
LOC_Os03g27980
OsAffx.25262.1.S1_at--698--8791Chr03:16050785..16050809 (25 bp)
TGTTCAACTACGACGGCTCGCGCAA
LOC_Os03g27980
OsAffx.25262.1.S1_at--233--2031Chr03:16050791..16050815 (25 bp)
ACTACGACGGCTCGCGCAAGTACAA
LOC_Os03g27980
OsAffx.25262.1.S1_at--503--7251Chr03:16050859..16050883 (25 bp)
GTCCGCTACCTGTCGCGGCAGTGGT
LOC_Os03g27980
OsAffx.25262.1.S1_at--1063--7171Chr03:16050934..16050958 (25 bp)
GTCGGCTACGCGTGCCAGTACGCCG
LOC_Os03g27980
OsAffx.25262.1.S1_at--481--6991Chr03:16051020..16051044 (25 bp)
GTACGCGTTCAATCAGTTCTTCCAG
LOC_Os03g27980
OsAffx.25262.1.S1_at--857--9731Chr03:16051028..16051052 (25 bp)
TCAATCAGTTCTTCCAGGCGGCCAA
LOC_Os03g27980
OsAffx.25262.1.S1_at--210--10691Chr03:16051039..16051063 (25 bp)
TTCCAGGCGGCCAACCAGATGAAGG
LOC_Os03g27980
OsAffx.25262.1.S1_at--838--4391Chr03:16051048..16051072 (25 bp)
GCCAACCAGATGAAGGGCTCCTGCA
LOC_Os03g27980
OsAffx.25262.1.S1_at--1021--8991Chr03:16051058..16051082 (25 bp)
TGAAGGGCTCCTGCAACTTCAACAA
LOC_Os03g27980
Target Sequence 
GGCGGCCGCAGATGCCCGACGTCTACGTGTTCGCGCTGCTCGACGAGGACGCCAAGAGCATCGACCCGGGCAGCTTCGAG
CGCCACTGGGGCGTGTTCAACTACGACGGCTCGCGCAAGTACAACCTCCGCCTCGCCGGCGGCCGGAGCATCGCGCCGGC
GAGGGGCGTCCGCTACCTGTCGCGGCAGTGGTGCGTGCTCCGGCCGGACGCCAGCCCGGCCGACCCGGCGATCGGCGGCG
CCGTCGGCTACGCGTGCCAGTACGCCGACTGCACCAGCCTCGGCGCCGGCTCGTCGTGCGGCGGCCTCGACGCCCGCGGC
AACGTCTCGTACGCGTTCAATCAGTTCTTCCAGGCGGCCAACCAGATGAAGGGCTCCTGCAACTTCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis