Browse Element(s) Details


Os.48059.1.S1_at

Description gb:AK073478.1
DB_XREF= gi:32983501
TID=Os.48059.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044C19, full insert sequence.
FL= gb:AK073478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2797011/11Pre-mRNA splicing factor PRP17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g28000OsAffx.13087.1.S1_at10/113+16066758..16067252hypothetical protein
LOC_Os03g28010Os.7307.3.S1_x_at4/113+16072033..16081962transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48059.1.S1_at--481--8491Chr03:16046247..16046271 (25 bp)
TGGCAGGTTACGCTTGTCAAGTGAA
LOC_Os03g27970
Os.48059.1.S1_at--1047--7351Chr03:16046267..16046291 (25 bp)
GTGAACTTCTCACCAGATGGGAGGT
LOC_Os03g27970
Os.48059.1.S1_at--1023--1231Chr03:16046318..16046342 (25 bp)
AGTTGCTGGTTCTGGGACTGGAAAA
LOC_Os03g27970
Os.48059.1.S1_at--256--791Chr03:16046392..16046416 (25 bp)
ATGTGAGTGGCATCCCTTGGAGACT
LOC_Os03g27970
Os.48059.1.S1_at--190--1331Chr03:16047598..16047622 (25 bp)
AGAGGTTTCTCGAGAATGTCCTGGT
LOC_Os03g27970
Os.48059.1.S1_at--181--5571Chr03:16047679..16047703 (25 bp)
GAAAGCACGCATGTCTATCCAGAAA
LOC_Os03g27970
Os.48059.1.S1_at--939--751Chr03:16047750..16047774 (25 bp)
ATGTAAGCTCGTTCTGCTATCGAAA
LOC_Os03g27970
Os.48059.1.S1_at--319--5471Chr03:16047822..16047846 (25 bp)
GAACTGTACGTTACTGCTTACCTGT
LOC_Os03g27970
Os.48059.1.S1_at--501--7871Chr03:16047851..16047875 (25 bp)
GGTTTCAGTTCGTTTATTAATGCCA
LOC_Os03g27970
Os.48059.1.S1_at--469--591Chr03:16047870..16047894 (25 bp)
ATGCCAACATTTGTAGCAGCTCAGA
LOC_Os03g27970
Os.48059.1.S1_at--732--2211Chr03:16047895..16047919 (25 bp)
ACAAGGCTTGAATACCAGGTTTTAT
LOC_Os03g27970
Target Sequence 
TGGCAGGTTACGCTTGTCAAGTGAACTTCTCACCAGATGGGAGGTTCGTGATGTCAGGAGATGGTGAAGNTAGTTGCTGG
TTCTGGGACTGGAAAAGCTGCAGGAGATTTAAGACGTTGAAGTGCCACAATGGAGTTTGCATTGGATGTGAGTGGCATCC
CTTGGAGACTAGCAAGGTTGCAACATGTGGATGGGATGGCGTAATTAAGTACTGGGATTGAAGTTTTGGAAATGTAATGA
GAGAGGTTTCTCGAGAATGTCCTGGTTTTGTGGACAAGTTCATGGCAATGCAATTTACAAGGTTTGAACTTCAGGAGATG
TTGAAAGCACGCATGTCTATCCAGAAAACTTCAATGTCATCAGGTGAAAACTATACCATGTTTTTAAGCTACCATGTAAG
CTCGTTCTGCTATCGAAAGATTGTAATGTACTATGCTATGTATACATACTGGACCAATCAATTTTGAACTGTACGTTACT
GCTTACCTGTTTTTGGTTTCAGTTCGTTTATTAATGCCAACATTTGTAGCAGCTCAGAACAAGGCTTGAATACCAGGTTT
TAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis