Browse Element(s) Details


Os.49727.1.S2_at

Description gb:AK103513.1
DB_XREF= gi:32988722
TID=Os.49727.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49727 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131G05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033131G05, full insert sequence.
FL= gb:AK071398.1 gb:AK103513.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2793011/11WW domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27870NANA3+15987489..15993974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27880Os.54775.1.S1_at11/113+15995255..15997501pentatricopeptide, putative
LOC_Os03g27890OsAffx.13085.1.S1_at10/113+15998452..16000607hypothetical protein
LOC_Os03g27900OsAffx.13086.1.S1_at11/113+16003951..16004744ZIM motif family protein, expressed
LOC_Os03g27910OsAffx.30226.2.S1_s_at9/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.24587.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.2.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.4.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_x_at2/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.19052.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27920OsAffx.25260.1.S1_at11/113+16011891..16013230hypothetical protein
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49727.1.S2_at--121--3451Chr03:16023523..16023547 (25 bp)
CAGTTGATCCTCCTTGGGCAGTTGA
LOC_Os03g27930
Os.49727.1.S2_at--396--6251Chr03:16023794..16023818 (25 bp)
GATGGTTCAGATGTGCAGGACGCTA
LOC_Os03g27930
Os.49727.1.S2_at--1119--2371Chr03:16023861..16023885 (25 bp)
AAACGCCTGTGCTCAATCATCAAAG
LOC_Os03g27930
Os.49727.1.S2_at--778--1811Chr03:16023969..16023993 (25 bp)
ACCCAGTTCACTTGGTGCAGCAACA
LOC_Os03g27930
Os.49727.1.S2_at--207--4171Chr03:16024040..16024064 (25 bp)
GCCCCTCCCTAAGTAGTTGATTTTG
LOC_Os03g27930
Os.49727.1.S2_at--351--4351Chr03:16024102..16024126 (25 bp)
CCAGTGTATCTGTTTGTGTCATCAA
LOC_Os03g27930
Os.49727.1.S2_at--192--8731Chr03:16024118..16024142 (25 bp)
TGTCATCAACCTCTCTGTTATTGCA
LOC_Os03g27930
Os.49727.1.S2_at--1135--51Chr03:16024137..16024161 (25 bp)
ATTGCACCGTCCACTGTACGATATA
LOC_Os03g27930
Os.49727.1.S2_at--67--6511Chr03:16024156..16024180 (25 bp)
GATATATAGCTCTTGCGGCATCCCA
LOC_Os03g27930
Os.49727.1.S2_at--1009--4911Chr03:16024198..16024222 (25 bp)
GCTTCCCTAGCAAATCTATCTTCGA
LOC_Os03g27930
Os.49727.1.S2_at--377--7411Chr03:16024245..16024269 (25 bp)
GTGATATGTTCTATGCATCGCTCAT
LOC_Os03g27930
Target Sequence 
CAGTTGATCCTCCTTGGGCAGTTGAGGTAGAGAAGAATTTCCTCAATGGGAAGCTGAAAGCCATAACAGCATATTTTGAG
CAGCAGGATGGTTCAGATGTGCAGGACGCTAGTGATACAAACCCCCAAAACCCAGAATACCATGCTTAGTGAAAAACGCC
TGTGCTCAATCATCAAAGGTCAGCGTAATCACAAGGTGCCACTCAGGCCATCGTGTAAGGGCGCGTTCGGCTGTCGTGTG
CAGCGGTACCCTGCAGCCTACACCCAGTTCACTTGGTGCAGCAACAAGCTGTAACATGGCTGTGAAACAGCGCTGTACAA
GCAGCCGAAGAGGCCCCTCCCTAAGTAGTTGATTTTGGTTCTTACTTGCTAGCATGAAGTTTCTGTAATTATGTCCAGTG
TATCTGTTTGTGTCATCAACCTCTCTGTTATTGCACCGTCCACTGTACGATATATAGCTCTTGCGGCATCCCAGCAAGCA
TCATGGTGCTGCTTCCCTAGCAAATCTATCTTCGAATGGCATGGGAAAAAGGCTGACGTGATATGTTCTATGCATCGCTC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49727.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis