Browse Element(s) Details


OsAffx.13085.1.S1_at

Description tigr:9631.m02756
TID=OsAffx.13085.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2789010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27850NANA3+15978130..15979305expressed protein
LOC_Os03g27860Os.47463.1.S1_x_at5/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27860Os.14491.2.S1_x_at4/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27870NANA3+15987489..15993974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27880Os.54775.1.S1_at11/113+15995255..15997501pentatricopeptide, putative
LOC_Os03g27890OsAffx.13085.1.S1_at10/113+15998452..16000607hypothetical protein
LOC_Os03g27900OsAffx.13086.1.S1_at11/113+16003951..16004744ZIM motif family protein, expressed
LOC_Os03g27910OsAffx.30226.2.S1_s_at9/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.24587.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.2.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.4.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_x_at2/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.19052.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27920OsAffx.25260.1.S1_at11/113+16011891..16013230hypothetical protein
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13085.1.S1_at--514--8332Chr03:15998551..15998575 (25 bp)
GGCTGCGCGCAGAGGAGTCCTGATG
LOC_Os03g27890
OsAffx.13085.1.S1_at--684--6091Chr03:15998565..15998589 (25 bp)
GAGTCCTGATGAGGGCGACGCGGTG
LOC_Os03g27890
OsAffx.13085.1.S1_at--708--8371Chr03:15998643..15998666 (24 bp)
GGCGATCTCCAATGGCAGACCCGGG
LOC_Os03g27890
OsAffx.13085.1.S1_at--708--6411Chr03:15998646..15998666 (21 bp)
GATCTCCAATGGCAGACCCGGGTTG
LOC_Os03g27890
OsAffx.13085.1.S1_at--78--3811NONE
CTCCAATGGCAGACCCGGGTTGGGA
NONE
OsAffx.13085.1.S1_at--1119--6531Chr03:16000383..16000407 (25 bp)
GATTTTGGGAGGAAGCCAAGTCCTT
LOC_Os03g27890
OsAffx.13085.1.S1_at--92--7671Chr03:16000423..16000447 (25 bp)
GGGATGCTCTGGAACACCACCGTAA
LOC_Os03g27890
OsAffx.13085.1.S1_at--1143--31Chr03:16000461..16000485 (25 bp)
ATTGTCGTGGCGTCTCTCCCATCCA
LOC_Os03g27890
OsAffx.13085.1.S1_at--963--6011Chr03:16000502..16000526 (25 bp)
TGAAAACCACACCCTGGTTTCCAAG
LOC_Os03g27890
OsAffx.13085.1.S1_at--906--8251Chr03:16000539..16000563 (25 bp)
GGCACCATCAGCATCGAAACCTTAT
LOC_Os03g27890
OsAffx.13085.1.S1_at--393--9351Chr03:16000552..16000576 (25 bp)
TCGAAACCTTATTGAATGCGTCGTT
LOC_Os03g27890
Target Sequence 
GGCTGCGCGCAGAGGAGTCCTGATGAGGGCGACGCGGTGGAGGAGCAGCAGTGCGAGCGGTGGGGCGGCGCGGACGGTGG
GGCCTCCACTCCGGCGATCTCCAATGGCAGACCCGGGTTGGGAGATTTTGGGAGGAAGCCAAGTCCTTTCAGGGCCGACA
GTGGGGATGCTCTGGAACACCACCGTAACCCCGCTAGGGGCATTGTCGTGGCGTCTCTCCCATCCATGGTGGAATCCTTA
GGTGAAAACCACACCCTGGTTTCCAAGGTGGCGGATGGCGGCACCATCAGCATCGAAACCTTATTGAATGCGTCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13085.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis