Browse Element(s) Details


OsAffx.13086.1.S1_at

Description tigr:9631.m02757
TID=OsAffx.13086.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2790011/11ZIM motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27850NANA3+15978130..15979305expressed protein
LOC_Os03g27860Os.47463.1.S1_x_at5/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27860Os.14491.2.S1_x_at4/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27870NANA3+15987489..15993974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27880Os.54775.1.S1_at11/113+15995255..15997501pentatricopeptide, putative
LOC_Os03g27890OsAffx.13085.1.S1_at10/113+15998452..16000607hypothetical protein
LOC_Os03g27900OsAffx.13086.1.S1_at11/113+16003951..16004744ZIM motif family protein, expressed
LOC_Os03g27910OsAffx.30226.2.S1_s_at9/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.24587.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.2.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.4.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_x_at2/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.19052.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27920OsAffx.25260.1.S1_at11/113+16011891..16013230hypothetical protein
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13086.1.S1_at--479--6371Chr03:16004476..16004500 (25 bp)
GGCCAAGGAGAAGATGGTCGTCGAC
LOC_Os03g27900
OsAffx.13086.1.S1_at--1086--4091Chr03:16004271..16004291 (21 bp)
CGACGGCCGGAAGTGCATGTGACGC
LOC_Os03g27900
OsAffx.13086.1.S1_at--158--8191Chr03:16004263..16004287 (25 bp)
GGAAGTGCATGTGACGCCGTCGGTG
LOC_Os03g27900
OsAffx.13086.1.S1_at--60--1951Chr03:16004223..16004247 (25 bp)
ACGGCGCCATTGACCATCGTCTACG
LOC_Os03g27900
OsAffx.13086.1.S1_at--1012--8391Chr03:16004221..16004245 (25 bp)
GGCGCCATTGACCATCGTCTACGGC
LOC_Os03g27900
OsAffx.13086.1.S1_at--605--7151Chr03:16004205..16004229 (25 bp)
GTCTACGGCGGCCAGGTGCTGGTGT
LOC_Os03g27900
OsAffx.13086.1.S1_at--114--8811Chr03:16004183..16004207 (25 bp)
TGTTCGAGCACTACACGGCGGAGGC
LOC_Os03g27900
OsAffx.13086.1.S1_at--572--8591Chr03:16004147..16004171 (25 bp)
TGGTGCAGCGCACGCAGCATCTGCT
LOC_Os03g27900
OsAffx.13086.1.S1_at--318--1651Chr03:16004141..16004165 (25 bp)
AGCGCACGCAGCATCTGCTGGCTGC
LOC_Os03g27900
OsAffx.13086.1.S1_at--20--8351Chr03:16004103..16004127 (25 bp)
GGCGGTGGGAACAAAAACAATAATG
LOC_Os03g27900
OsAffx.13086.1.S1_at--76--3091Chr03:16004085..16004109 (25 bp)
AATAATGTCACCGTTGTGACTCCCC
LOC_Os03g27900
Target Sequence 
GGCCAAGGAGAAGATGGTCGTCGACGCCCGGACCATGCAGCTCTTCCCCACGCGATCCGCAGACGGCGTCGTCGTGTCGC
CGGCTCCGGCGCCGGCGGCGGCCCAAGAACGACGACGGCCGGAAGTGCATGTGACGCCGTCGGTGCCGGCGACGGCGCCG
ACGGCGCCATTGACCATCGTCTACGGCGGCCAGGTGCTGGTGTTCGAGCACTACACGGCGGAGGCGGCCGAGAAGCTGGT
GCAGCGCACGCAGCATCTGCTGGCTGCGGCCGCCGGCGGCGGCGGTGGGAACAAAAACAATAATGTCACCGTTGTGACTC
CCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis