Browse Element(s) Details


Os.54775.1.S1_at

Description gb:AK106734.1
DB_XREF= gi:32991943
TID=Os.54775.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A03, full insert sequence.
FL= gb:AK106734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2788011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27840Os.15012.1.S1_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27840Os.15012.1.S2_a_at11/113+15965195..15971595expressed protein
LOC_Os03g27850NANA3+15978130..15979305expressed protein
LOC_Os03g27860Os.47463.1.S1_x_at5/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27860Os.14491.2.S1_x_at4/113+15980820..15984379transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27870NANA3+15987489..15993974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27880Os.54775.1.S1_at11/113+15995255..15997501pentatricopeptide, putative
LOC_Os03g27890OsAffx.13085.1.S1_at10/113+15998452..16000607hypothetical protein
LOC_Os03g27900OsAffx.13086.1.S1_at11/113+16003951..16004744ZIM motif family protein, expressed
LOC_Os03g27910OsAffx.30226.2.S1_s_at9/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.24587.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.2.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.4.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_x_at2/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.19052.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27920OsAffx.25260.1.S1_at11/113+16011891..16013230hypothetical protein
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54775.1.S1_at--1160--1151Chr03:15996022..15996046 (25 bp)
AGTCATGCTGGCTTAGTTGACCAAG
LOC_Os03g27880
Os.54775.1.S1_at--718--8431Chr03:15996005..15996029 (25 bp)
TGACCAAGGCCGGAATTTCTTTAAT
LOC_Os03g27880
Os.54775.1.S1_at--947--6331Chr03:15995893..15995917 (25 bp)
GATGCTTTTGATTTCATTCGGAACA
LOC_Os03g27880
Os.54775.1.S1_at--865--591Chr03:15995869..15995893 (25 bp)
ATGCCGATTAAACCTGATTCTGCTA
LOC_Os03g27880
Os.54775.1.S1_at--931--9471Chr03:15995834..15995858 (25 bp)
TCTGCTGGGTGCTTGTAGGATCCAT
LOC_Os03g27880
Os.54775.1.S1_at--253--2871Chr03:15995790..15995814 (25 bp)
AAGTGGCCTCACAAAACTTGTTTGA
LOC_Os03g27880
Os.54775.1.S1_at--204--3691Chr03:15995676..15995700 (25 bp)
CTTTGGTCAGACGTCAGAATTTGCA
LOC_Os03g27880
Os.54775.1.S1_at--301--5231Chr03:15995660..15995684 (25 bp)
GAATTTGCAAAAAACCCCTGGATGG
LOC_Os03g27880
Os.54775.1.S1_at--925--2351Chr03:15995649..15995673 (25 bp)
AAACCCCTGGATGGAGTTCAATTGA
LOC_Os03g27880
Os.54775.1.S1_at--646--7831Chr03:15995593..15995617 (25 bp)
GGTAACCAGATGAACATCCACCCTC
LOC_Os03g27880
Os.54775.1.S1_at--535--7871Chr03:15995512..15995536 (25 bp)
GGTTATGTTCCTGACTATAGTTTTG
LOC_Os03g27880
Target Sequence 
AGTCATGCTGGCTTAGTTGACCAAGGCCGGAATTTCTTTAATATGATGCAAACTGCATATGGTATTAAGCCAATTGCAAA
ACATTATGCTTGCATGGTAGACATGTTTGGAAGAGCTGGTCAGTTGGATGATGCTTTTGATTTCATTCGGAACATGCCGA
TTAAACCTGATTCTGCTATTTGGGGTGCTCTGCTGGGTGCTTGTAGGATCCATGGAAATGTTGAAATGGGAAAAGTGGCC
TCACAAAACTTGTTTGAACTTGATTCAAAGAACGTTGGATATTACGTTCTAATGTCTAATATGTATGCAAAGGTTGGGAA
GTGGGATGGAGTTGATGAAGTAAGATCTTTGGTCAGACGTCAGAATTTGCAAAAAACCCCTGGATGGAGTTCAATTGAGG
TGAAAAGATCAGTGAACGTATTTTACAGTGGTAACCAGATGAACATCCACCCTCAACATGAAGAGATCCAGAGAGAGCTA
CTTGATCTGTTGGCAAAGATAAGAAGTCTAGGTTATGTTCCTGACTATAGTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis