Browse Element(s) Details


OsAffx.25261.1.S1_x_at

Description tigr:9631.m02761
TID=OsAffx.25261.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2794011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27900OsAffx.13086.1.S1_at11/113+16003951..16004744ZIM motif family protein, expressed
LOC_Os03g27910OsAffx.30226.2.S1_s_at9/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.24587.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.2.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.4.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_x_at2/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.19052.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27920OsAffx.25260.1.S1_at11/113+16011891..16013230hypothetical protein
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25261.1.S1_x_at--565--3692Chr03:16027762..16027786 (25 bp)
CTATATTCTCTCTCAGAGGCGTGCT
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--1090--10193Chr03:16027763..16027787 (25 bp)
TATATTCTCTCTCAGAGGCGTGCTC
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--210--232Chr03:16027764..16027788 (25 bp)
ATATTCTCTCTCAGAGGCGTGCTCA
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--1012--10211Chr03:16027765..16027789 (25 bp)
TATTCTCTCTCAGAGGCGTGCTCAC
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--632--111Chr03:16027766..16027790 (25 bp)
ATTCTCTCTCAGAGGCGTGCTCACA
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--538--9511Chr03:16027770..16027794 (25 bp)
TCTCTCAGAGGCGTGCTCACACGGG
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--130--7651Chr03:16027793..16027817 (25 bp)
GGGAGGCATCGGTCGCGGCGGAGAT
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--186--951Chr03:16027822..16027846 (25 bp)
AGGACGGCGGCCAGCGGAGTGAAGC
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--532--4971Chr03:16027889..16027913 (25 bp)
GCATCATCGGCCGAGCAGAGTGGCA
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--689--491Chr03:16027894..16027918 (25 bp)
ATCGGCCGAGCAGAGTGGCAGCAGT
LOC_Os03g27940
OsAffx.25261.1.S1_x_at--405--591Chr03:16028039..16028063 (25 bp)
ATGCCACGGCGAGGGTGGATGCCGC
LOC_Os03g27940
Target Sequence 
CTATATTCTCTCTCAGAGGCGTGCTCACACGGGGAGGCATCGGTCGCGGCGGAGATGGCGAGGACGGCGGCCAGCGGAGT
GAAGCGGGGCAGCAGCGGCGGTGGACGAGCGCACGGCCGGCGGAGCGGCATCATCGGCCGAGCAGAGTGGCAGCAGTGGC
GAGCGAGCGCGCGGCAGGCGAGGACGGGACGGGCGTCGGCGACCTGCTTGGCGATCTCGGTGGCGGTATTGAGTGGGTTG
GCGGTGGTGAGGACGGCGGGTGGCGCGGCGAGGGCGGATGCCACGGCGAGGGTGGATGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25261.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis