Browse Element(s) Details


Os.26987.1.A1_at

Description gb:AK071357.1
DB_XREF= gi:32981380
TID=Os.26987.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.26987 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089F18, full insert sequence.
FL= gb:AK071357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2795011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27910OsAffx.30226.2.S1_s_at9/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.24587.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.2.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.4.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_x_at2/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.19052.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27920OsAffx.25260.1.S1_at11/113+16011891..16013230hypothetical protein
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26987.1.A1_at--937--491Chr03:16036493..16036517 (25 bp)
ATCGGTTCTTGTTGAGATGAGCTCA
LOC_Os03g27950
Os.26987.1.A1_at--657--10531Chr03:16036582..16036606 (25 bp)
TTCAGAGGCTGTTTCGTGTCATTCA
LOC_Os03g27950
Os.26987.1.A1_at--517--3451Chr03:16036605..16036629 (25 bp)
CAGTCAATTGTTGTCATTGCCGCAT
LOC_Os03g27950
Os.26987.1.A1_at--911--71Chr03:16036620..16036644 (25 bp)
ATTGCCGCATTGAATGTCCCTCTAT
LOC_Os03g27950
Os.26987.1.A1_at--327--3211Chr03:16036661..16036685 (25 bp)
CAAGGATTGGATCGACCGTTGAATA
LOC_Os03g27950
Os.26987.1.A1_at--20--10791Chr03:16036766..16036790 (25 bp)
TTGATATTGCTTTGGTTGACACAGA
LOC_Os03g27950
Os.26987.1.A1_at--967--711Chr03:16036794..16036818 (25 bp)
ATGATTTACCAGTTCAACCAGGGTG
LOC_Os03g27950
Os.26987.1.A1_at--94--2651Chr03:16036809..16036833 (25 bp)
AACCAGGGTGATCGTGTTGTGCATC
LOC_Os03g27950
Os.26987.1.A1_at--487--11Chr03:16036848..16036872 (25 bp)
CGTTCTTTTGTCTGTTAGGCCTAGA
LOC_Os03g27950
Os.26987.1.A1_at--1008--10091Chr03:16036863..16036887 (25 bp)
TAGGCCTAGAGCTATACTTTTTTGT
LOC_Os03g27950
Os.26987.1.A1_at--63--1271Chr03:16036946..16036970 (25 bp)
AGATTTTGGTTGTATCTCCACCTGA
LOC_Os03g27950
Target Sequence 
ATCGGTTCTTGTTGAGATGAGCTCAGAAATGATATCAGAAGATGGAGGAAAGGTGCCTCGCTCNAGCAAATTGAAAATAA
GGAGGGTGCTTCAGAGGCTGTTTCGTGTCATTCAGTCAATTGTTGTCATTGCCGCATTGAATGTCCCTCTATACATGATG
NTTCTGTTCAAGGATTGGATCGACCGTTGAATAGAGTGCGAAAGCCTAGTTCTATCAGTAATTAAGGGATACAACTATAG
GAGGACTTGCAAATGCAAGGTCGAATAATTAATTTGATATTGCTTTGGTTGACACAGAAAAATGATTTACCAGTTCAACC
AGGGTGATCGTGTTGTGCATCAACGTTCAGTGGCCCGTTCTTTTGTCTGTTAGGCCTAGAGCTATACTTTTTTGTACAAT
GTTCATACCAGTAGATATTGCTTGAAGATCACAGATGGTTCAGTAGAAGTATCAGATTTTGGTTGTATCTCCACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26987.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis