Browse Element(s) Details


Os.21823.1.S1_at

Description gb:AK069928.1
DB_XREF= gi:32979952
TID=Os.21823.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21823 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036P06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036P06, full insert sequence.
FL= gb:AK069928.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2796011/11Vacuolar cation/proton exchanger 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed
LOC_Os03g27960Os.21823.1.S1_at11/113+16039946..16043931Vacuolar cation/proton exchanger 2, putative, expressed
LOC_Os03g27970Os.48059.1.S1_at11/113+16044632..16047956Pre-mRNA splicing factor PRP17, putative, expressed
LOC_Os03g27980OsAffx.25262.1.S1_at11/113+16049767..16051245Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g27990Os.49145.1.S1_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g27990Os.49144.1.S1_s_at11/113+16051673..16057545leucine-rich repeat transmembrane protein kinase 1, putative, expressed
LOC_Os03g28000OsAffx.13087.1.S1_at10/113+16066758..16067252hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006816biological_processcalcium ion transport
GO:0030001biological_processmetal ion transport
GO:0005774cellular_componentvacuolar membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0012505cellular_componentendomembrane system
GO:0015368molecular_functioncalcium:cation antiporter activity
GO:0015369molecular_functioncalcium:hydrogen antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21823.1.S1_at--492--2511Chr03:16043421..16043445 (25 bp)
AACATATCATCTGTCCGAGTCCTGA
LOC_Os03g27960
Os.21823.1.S1_at--499--4071Chr03:16043436..16043460 (25 bp)
CGAGTCCTGATTTTTGACGGCCTAT
LOC_Os03g27960
Os.21823.1.S1_at--65--5731Chr03:16043451..16043475 (25 bp)
GACGGCCTATACCTGTCAGCAGTAT
LOC_Os03g27960
Os.21823.1.S1_at--572--5031Chr03:16043469..16043493 (25 bp)
GCAGTATCTCACACGGAGGCTTCAA
LOC_Os03g27960
Os.21823.1.S1_at--874--2491Chr03:16043492..16043516 (25 bp)
AACTTCCGGCCTGGAGTTGCAAGGG
LOC_Os03g27960
Os.21823.1.S1_at--1093--3191Chr03:16043511..16043535 (25 bp)
CAAGGGCCCTGATGCGGCTTTTTTA
LOC_Os03g27960
Os.21823.1.S1_at--507--10491Chr03:16043533..16043557 (25 bp)
TTAAGATAGCGACGGCATCGCCCTT
LOC_Os03g27960
Os.21823.1.S1_at--706--2471Chr03:16043630..16043654 (25 bp)
AACACTTGTCGCGATTTTTGATGAT
LOC_Os03g27960
Os.21823.1.S1_at--1162--7611Chr03:16043701..16043725 (25 bp)
GGGACACTGGATAACTGGACTACAT
LOC_Os03g27960
Os.21823.1.S1_at--58--3291Chr03:16043742..16043766 (25 bp)
CAAACGGTGCCAGTTGTGCAACATG
LOC_Os03g27960
Os.21823.1.S1_at--471--5151Chr03:16043759..16043783 (25 bp)
GCAACATGATTTGTCACTGCACATA
LOC_Os03g27960
Target Sequence 
AACATATCATCTGTCCGAGTCCTGATTTTTGACGGCCTATACCTGTCAGCAGTATCTCACACGGAGGCTTCAACTTCCGG
CCTGGAGTTGCAAGGGCCCTGATGCGGCTTTTTTAAGATAGCGACGGCATCGCCCTTTGATTGAGAACCTGTAACTTTAT
TATGGGATAGTGTAATGTGCCAAGNTCACTAGTCTGTATTTGCTGAAGAAACACTTGTCGCGATTTTTGATGATGTTGTT
GTACTGATGCCAATGAACTGGCTATAGCGTTGCAGTTCAAGGGACACTGGATAACTGGACTACATAGTCCATACACATTT
NCAAACGGTGCCAGTTGTGCAACATGATTTGTCACTGCACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis