Browse Element(s) Details


OsAffx.13121.1.S1_at

Description tigr:9631.m02962
TID=OsAffx.13121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3028011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30230OsAffx.3370.1.S1_at11/113+17208468..17209031Mitochondrial import inner membrane translocase subunit Tim17 family protein
LOC_Os03g30240OsAffx.25294.1.S1_at11/113+17213591..17214049hypothetical protein
LOC_Os03g30250Os.37902.1.S1_at11/113+17215334..17217366Phytochelatin synthetase-like conserved region family protein, expressed
LOC_Os03g30260Os.50763.1.S1_at11/113+17217308..17221476COBRA-like protein 2 precursor, putative, expressed
LOC_Os03g30264NANA3+17226272..17226922hypothetical protein
LOC_Os03g30270OsAffx.8319.1.S1_x_at2/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30270Os.12826.1.S1_at1/113+17230612..17232982retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g30280OsAffx.13121.1.S1_at11/113+17233535..17234151hypothetical protein
LOC_Os03g30290NANA3+17239325..17242217expressed protein
LOC_Os03g30300Os.24545.2.S1_x_at11/113+17242973..172477726-phosphogluconolactonase family protein, expressed
LOC_Os03g30300Os.24545.2.S1_at10/113+17242973..172477726-phosphogluconolactonase family protein, expressed
LOC_Os03g30320OsAffx.13124.1.S1_at5/113+17251733..17254400hypothetical protein
LOC_Os03g30320OsAffx.31757.1.S1_at1/113+17251733..17254400hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13121.1.S1_at--765--4871Chr03:17233987..17234011 (25 bp)
GCTATTGGTGGCGTCTACACAGTGC
LOC_Os03g30280
OsAffx.13121.1.S1_at--171--10231Chr03:17233985..17234009 (25 bp)
TATTGGTGGCGTCTACACAGTGCGT
LOC_Os03g30280
OsAffx.13121.1.S1_at--643--31Chr03:17233984..17234008 (25 bp)
ATTGGTGGCGTCTACACAGTGCGTT
LOC_Os03g30280
OsAffx.13121.1.S1_at--972--7711Chr03:17233981..17234005 (25 bp)
GGTGGCGTCTACACAGTGCGTTGAC
LOC_Os03g30280
OsAffx.13121.1.S1_at--336--8371Chr03:17233978..17234002 (25 bp)
GGCGTCTACACAGTGCGTTGACGGT
LOC_Os03g30280
OsAffx.13121.1.S1_at--579--9511Chr03:17233974..17233998 (25 bp)
TCTACACAGTGCGTTGACGGTGGGA
LOC_Os03g30280
OsAffx.13121.1.S1_at--549--2291Chr03:17233852..17233873 (22 bp)
AAATGAGAGAGAGTGCCCCGGGCGC
LOC_Os03g30280
OsAffx.13121.1.S1_at--1021--4031Chr03:17233674..17233698 (25 bp)
CGTTCCCACGCGGTTTGATTGAGAG
LOC_Os03g30280
OsAffx.13121.1.S1_at--220--6711Chr03:17233673..17233697 (25 bp)
GTTCCCACGCGGTTTGATTGAGAGG
LOC_Os03g30280
OsAffx.13121.1.S1_at--591--10651Chr03:17233672..17233696 (25 bp)
TTCCCACGCGGTTTGATTGAGAGGC
LOC_Os03g30280
OsAffx.13121.1.S1_at--590--4171Chr03:17233670..17233694 (25 bp)
CCCACGCGGTTTGATTGAGAGGCGC
LOC_Os03g30280
Target Sequence 
GCTATTGGTGGCGTCTACACAGTGCGTTGACGGTGGGAGCGGCGGTGGCGCGCGGCTGGAGATCGCCGGCGAACGGTGGC
GCGTGGGCTCGGCGCAGGGAGAGCGAGGGAGGCGAAGGAAAGCTCGGGGAAGGAGGGAAAATGAGAGAGAGTGCCCCGGG
CGCCGTTCCTTGCGGGGAGAGTGGGGGAAATGGTGGACGACGTGGAGGGGGTCGTTCCCACGCGGTTTGATTGAGAGGCG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis