Browse Element(s) Details


OsAffx.13191.1.S1_at

Description gb:NM_184682.1
DB_XREF= gi:34896453
TID=OsAffx.13191.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0077G22.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3588011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35860NANA3+19839551..19842143hypothetical protein
LOC_Os03g35870OsAffx.22699.1.S1_x_at5/113+19843053..19850021retrotransposon protein, putative, unclassified
LOC_Os03g35870OsAffx.13786.1.S1_x_at2/113+19843053..19850021retrotransposon protein, putative, unclassified
LOC_Os03g35870OsAffx.18275.1.S1_x_at1/113+19843053..19850021retrotransposon protein, putative, unclassified
LOC_Os03g35870Os.52731.1.S1_at1/113+19843053..19850021retrotransposon protein, putative, unclassified
LOC_Os03g35870OsAffx.18957.1.S1_at1/113+19843053..19850021retrotransposon protein, putative, unclassified
LOC_Os03g35880OsAffx.13191.1.S1_at11/113+19856401..19856709hypothetical protein
LOC_Os03g35894OsAffx.30405.1.S1_x_at1/113+19870756..19871613hypothetical protein
LOC_Os03g35910NANA3+19872315..19874750Transposable element protein, putative, Retrotrans_gag
LOC_Os03g35920Os.30754.1.S1_at3/113+19880248..19880952expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13191.1.S1_at--300--8391Chr03:19856403..19856427 (25 bp)
GGCGCATAGCCTCGTCGGCTTCTAT
LOC_Os03g35880
OsAffx.13191.1.S1_at--822--9971Chr03:19856409..19856433 (25 bp)
TAGCCTCGTCGGCTTCTATGGCATG
LOC_Os03g35880
OsAffx.13191.1.S1_at--274--7191Chr03:19856416..19856440 (25 bp)
GTCGGCTTCTATGGCATGCTCGGTG
LOC_Os03g35880
OsAffx.13191.1.S1_at--817--4971Chr03:19856522..19856546 (25 bp)
GCATCGGTTTACTCAGTGGCGATGA
LOC_Os03g35880
OsAffx.13191.1.S1_at--110--3971Chr03:19856526..19856550 (25 bp)
CGGTTTACTCAGTGGCGATGATGAT
LOC_Os03g35880
OsAffx.13191.1.S1_at--573--9631Chr03:19856534..19856558 (25 bp)
TCAGTGGCGATGATGATTGCCCCGC
LOC_Os03g35880
OsAffx.13191.1.S1_at--561--4131Chr03:19856586..19856610 (25 bp)
CGCCTACGCCGGTGGGTAGCTCGCT
LOC_Os03g35880
OsAffx.13191.1.S1_at--292--9351Chr03:19856606..19856630 (25 bp)
TCGCTGCAGCTTGCGTGCTCGTCGA
LOC_Os03g35880
OsAffx.13191.1.S1_at--207--8611Chr03:19856656..19856680 (25 bp)
TGGTCCGGCAACATGCACCATGCAT
LOC_Os03g35880
OsAffx.13191.1.S1_at--640--651Chr03:19856668..19856692 (25 bp)
ATGCACCATGCATCCGCGTGCAAGG
LOC_Os03g35880
OsAffx.13191.1.S1_at--950--631Chr03:19856675..19856699 (25 bp)
ATGCATCCGCGTGCAAGGCCAATGG
LOC_Os03g35880
Target Sequence 
GGCGCATAGCCTCGTCGGCTTCTATGGCATGCTCGGTGACATGCGCCGCCTCCGCGACCTCATCCCGGAGAGCTACGTCA
ACGATGCCGCGCTTCGGCAGAAGGGGGAGGATGACCACGGCATCGGTTTACTCAGTGGCGATGATGATTGCCCCGCCTTC
GACCGCCTCTGGAAGTACTGCCGCGCCTACGCCGGTGGGTAGCTCGCTGCAGCTTGCGTGCTCGTCGACGGCGCCTCCGA
CATCGCCATCAACTGGTCCGGCAACATGCACCATGCATCCGCGTGCAAGGCCAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13191.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis