Browse Element(s) Details


Os.30754.1.S1_at

Description gb:AK108368.1
DB_XREF= gi:32993577
TID=Os.30754.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0077G22.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-D05, full insert sequence.
FL= gb:AK108368.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g359203/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35880OsAffx.13191.1.S1_at11/113+19856401..19856709hypothetical protein
LOC_Os03g35894OsAffx.30405.1.S1_x_at1/113+19870756..19871613hypothetical protein
LOC_Os03g35910NANA3+19872315..19874750Transposable element protein, putative, Retrotrans_gag
LOC_Os03g35920Os.30754.1.S1_at3/113+19880248..19880952expressed protein
LOC_Os03g35930NANA3+19890793..19891581retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35940NANA3+19892310..19894755retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g35950OsAffx.29246.1.S1_x_at6/113+19901971..19902842expressed protein
LOC_Os03g35950Os.46610.1.A1_x_at1/113+19901971..19902842expressed protein
LOC_Os03g35960OsAffx.25371.1.S1_at8/113+19904268..19904606hypothetical protein
LOC_Os03g35970Os.26535.1.S1_x_at4/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.26592.3.S1_x_at3/113+19905897..19910473hypothetical protein
LOC_Os03g35970Os.27520.8.S1_x_at2/113+19905897..19910473hypothetical protein
LOC_Os03g35970OsAffx.20736.1.S1_at1/113+19905897..19910473hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30754.1.S1_at--155--4551Chr03:19880322..19880346 (25 bp)
GCCCATGCCGTGGTGAACATTCTTG
LOC_Os03g35920
Os.30754.1.S1_at--651--1451Chr03:19880296..19880320 (25 bp)
AGAAGAACAGCCACAAGCAGCACAA
LOC_Os03g35920
Os.30754.1.S1_at--612--1991Chr03:19880252..19880276 (25 bp)
ACTCCAGTCGATCCAGTGACAGTGA
LOC_Os03g35920
Os.30754.1.S1_at--214--5311Chr03:19880225..19880249 (25 bp)
GAAGGTTAGCACCAGTAAGACTCGG
NONE
Os.30754.1.S1_at--390--1391Chr03:19880208..19880232 (25 bp)
AGACTCGGTGAATCTGGTGTTTAGT
NONE
Os.30754.1.S1_at--639--451Chr03:19880168..19880192 (25 bp)
ATCTCATACTGAATTTGCTCCGTAG
NONE
Os.30754.1.S1_at--574--9071Chr03:19880153..19880177 (25 bp)
TGCTCCGTAGGTTTTTTCTTCTTAG
NONE
Os.30754.1.S1_at--293--10571Chr03:19880138..19880162 (25 bp)
TTCTTCTTAGTTTCATTCACGGTGG
NONE
Os.30754.1.S1_at--678--5211Chr03:19880094..19880118 (25 bp)
GAATTTGATTTGTCGACTACGGGTA
NONE
Os.30754.1.S1_at--545--10051Chr03:19880051..19880075 (25 bp)
TAGTCTTGACAAGCTGCATCTTAAT
NONE
Os.30754.1.S1_at--290--4771Chr03:19880039..19880063 (25 bp)
GCTGCATCTTAATCTGAACTCGAGT
NONE
Target Sequence 
GCCCATGCCGTGGTGAACATTCTTGAAGAAGAACAGCCACAAGCAGCACAACATCCCGTCTCTCCATCACACTCCAGTCG
ATCCAGTGACAGTGAATGAAGGTTAGCACCAGTAAGACTCGGTGAATCTGGTGTTTAGTATATTCGAAATTGCAATCTCA
TACTGAATTTGCTCCGTAGGTTTTTTCTTCTTAGTTTCATTCACGGTGGATTTGTTTTAATTAAACTGAATTTGATTTGT
CGACTACGGGTAAAAGGTGTAATATATAAATAGTCTTGACAAGCTGCATCTTAATCTGAACTCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30754.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis