Browse Element(s) Details


OsAffx.13262.1.S1_at

Description tigr:9631.m03877
TID=OsAffx.13262.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4030011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g40260Os.52337.1.S1_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40260OsAffx.22679.1.S1_x_at11/113+22328243..22334802regulator of chromosome condensation, putative, expressed
LOC_Os03g40270Os.5039.1.S1_at11/113+22335957..22338542Alpha-1,4-glucan-protein synthase, putative, expressed
LOC_Os03g40290OsAffx.10447.1.S1_at11/113+22354481..22355203hypothetical protein
LOC_Os03g40300OsAffx.13262.1.S1_at11/113+22357044..22357773hypothetical protein
LOC_Os03g40310Os.37314.1.S1_at4/113+22368427..22373259Peptidyl-prolyl cis-trans isomerase E, putative, expressed
LOC_Os03g40320NANA3+22377728..22378347hypothetical protein
LOC_Os03g40330OsAffx.25450.1.S1_at11/113+22378634..22379450Glycosyl hydrolases family 17 protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13262.1.S1_at--451--9491Chr03:22357148..22357172 (25 bp)
TCTCTCTGGGTTGTCAAGAGAGTGT
LOC_Os03g40300
OsAffx.13262.1.S1_at--119--9471Chr03:22357152..22357176 (25 bp)
TCTGGGTTGTCAAGAGAGTGTAGTT
LOC_Os03g40300
OsAffx.13262.1.S1_at--164--6011Chr03:22357165..22357189 (25 bp)
GAGAGTGTAGTTTGGGCTACCGTTT
LOC_Os03g40300
OsAffx.13262.1.S1_at--861--1291Chr03:22357166..22357190 (25 bp)
AGAGTGTAGTTTGGGCTACCGTTTG
LOC_Os03g40300
OsAffx.13262.1.S1_at--228--8671Chr03:22357170..22357194 (25 bp)
TGTAGTTTGGGCTACCGTTTGTTGG
LOC_Os03g40300
OsAffx.13262.1.S1_at--898--4831Chr03:22357180..22357204 (25 bp)
GCTACCGTTTGTTGGAAGGCCCTAG
LOC_Os03g40300
OsAffx.13262.1.S1_at--485--9951Chr03:22357182..22357206 (25 bp)
TACCGTTTGTTGGAAGGCCCTAGCG
LOC_Os03g40300
OsAffx.13262.1.S1_at--510--6591Chr03:22357190..22357214 (25 bp)
GTTGGAAGGCCCTAGCGGTTTAGCT
LOC_Os03g40300
OsAffx.13262.1.S1_at--549--10671Chr03:22357191..22357215 (25 bp)
TTGGAAGGCCCTAGCGGTTTAGCTC
LOC_Os03g40300
OsAffx.13262.1.S1_at--940--8491Chr03:22357192..22357216 (25 bp)
TGGAAGGCCCTAGCGGTTTAGCTCT
LOC_Os03g40300
OsAffx.13262.1.S1_at--637--5291Chr03:22357194..22357218 (25 bp)
GAAGGCCCTAGCGGTTTAGCTCTTT
LOC_Os03g40300
Target Sequence 
TCTCTCTGGGTTGTCAAGAGAGTGTAGTTTGGGCTACCGTTTGTTGGAAGGCCCTAGCGGTTTAGCTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis