Browse Element(s) Details


OsAffx.13346.1.S1_at

Description tigr:9631.m04316
TID=OsAffx.13346.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Glutaredoxin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4465011/11Glutaredoxin family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44610Os.9033.1.S1_at10/113+25070355..25078460IQ calmodulin-binding motif family protein, expressed
LOC_Os03g44620Os.46241.1.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44620Os.46241.2.S1_s_at11/113+25081435..25085183DnaJ protein homolog, putative, expressed
LOC_Os03g44630Os.55267.1.S1_at11/113+25085236..25085992Plastocyanin-like domain containing protein, expressed
LOC_Os03g44636OsAffx.25539.1.S1_at11/113+25089731..25090282Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g44642NANA3+25091335..25091829Zinc finger, C3HC4 type family protein
LOC_Os03g44650OsAffx.13346.1.S1_at11/113+25093821..25094795Glutaredoxin family protein
LOC_Os03g44660Os.16447.1.S1_at11/113+25096714..25100593Pyrimidine 5'-nucleotidase family protein, expressed
LOC_Os03g44670Os.7277.1.S1_s_at11/113+25101804..25105719expressed protein
LOC_Os03g44680OsAffx.25541.1.S1_at11/113+25109139..25109573hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005489molecular_functionelectron transporter activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13346.1.S1_at--794--2591Chr03:25094375..25094399 (25 bp)
AACGACGGCTTCTTCTTGTTGGATG
LOC_Os03g44650
OsAffx.13346.1.S1_at--793--3651Chr03:25094367..25094391 (25 bp)
CTTCTTCTTGTTGGATGAGGAGGAG
LOC_Os03g44650
OsAffx.13346.1.S1_at--263--8371Chr03:25094312..25094336 (25 bp)
GGCGTCGACGAGGACCCGCTGGAAG
LOC_Os03g44650
OsAffx.13346.1.S1_at--168--4711Chr03:25094295..25094319 (25 bp)
GCTGGAAGGGTTCGAGACCCGGTGC
LOC_Os03g44650
OsAffx.13346.1.S1_at--416--8311Chr03:25094065..25094089 (25 bp)
GGCTGTTCGTGGACGGCCGGTATCT
LOC_Os03g44650
OsAffx.13346.1.S1_at--38--1951Chr03:25094053..25094077 (25 bp)
ACGGCCGGTATCTGGGCGGCGCCAA
LOC_Os03g44650
OsAffx.13346.1.S1_at--855--1051Chr03:25094026..25094050 (25 bp)
AGGTGGTCACCCTGCACGAGCAGGC
LOC_Os03g44650
OsAffx.13346.1.S1_at--119--4671Chr03:25093907..25093931 (25 bp)
GCGTGCAGCGGCAGTCATAGGCTCT
LOC_Os03g44650
OsAffx.13346.1.S1_at--96--1171Chr03:25093895..25093919 (25 bp)
AGTCATAGGCTCTATGACGCCGCCG
LOC_Os03g44650
OsAffx.13346.1.S1_at--45--4531Chr03:25093858..25093882 (25 bp)
GCCGCGTGCCGTGTACCGGATGCAA
LOC_Os03g44650
OsAffx.13346.1.S1_at--196--4491Chr03:25093851..25093875 (25 bp)
GCCGTGTACCGGATGCAACGAGAAC
LOC_Os03g44650
Target Sequence 
AACGACGGCTTCTTCTTGTTGGATGAGGAGGAGGGCTGCGGCGTGGCGGGCGGCGTCGGCTTTGGCGTCGACGAGGACCC
GCTGGAAGGGTTCGAGACCCGGTGCCCGCCGGGCGGCGAGCGCGCGGTGGTGCTCTACACCACGTCGCTCCGCGGCGTGC
GCAAGACGTTCGAGGACTGCGCCACCGTGCGCCGCCTGCTGGAGGGCCTCCGCGTCGCCTTCCTGGAGCGCGACGTCTCC
ATGCACGCGCCCTACCGGGACGAGCTCCGCGCCCTTCTGGTGGGCCTGGACGACGCCGCCGTGCCGCCGCGGCTGTTCGT
GGACGGCCGGTATCTGGGCGGCGCCAACGAGGTGGTCACCCTGCACGAGCAGGCGCGCCTCCGCCCGGTGCTCCGCCGCG
CGCCACGCCGCGGCGCGGGCGACGCCGCGTGCGCCGTCTGCGGCGGCGCCTGGTTCGTCGTCTGCGGCGCGTGCAGCGGC
AGTCATAGGCTCTATGACGCCGCCGCCGCCGCCGGCGGCCGCGTGCCGTGTACCGGATGCAACGAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis