Browse Element(s) Details


OsAffx.13365.1.S1_at

Description tigr:9631.m04414
TID=OsAffx.13365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4558011/11Zinc knuckle family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45550NANA3+25653782..25659033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45560OsAffx.10020.1.S1_x_at1/113+25659805..25660167retrotransposon protein, putative, unclassified
LOC_Os03g45560OsAffx.9790.1.S1_x_at1/113+25659805..25660167retrotransposon protein, putative, unclassified
LOC_Os03g45570NANA3+25673515..25676402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45580OsAffx.13365.1.S1_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45580OsAffx.13365.1.S1_x_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45590OsAffx.3521.1.S1_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.3521.1.S1_x_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.2.S1_x_at4/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.27088.1.A1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.3.S1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.30387.1.S1_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.45902.1.A1_x_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45619Os.10596.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619Os.51541.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.13368.1.S1_at10/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.21533.1.S1_at1/113+25700226..25714876Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13365.1.S1_at--479--9072Chr07:9959905..9960084 (25 bp)
TGCTTATGACACTAATTACTCACAA
NONE
OsAffx.13365.1.S1_at--43--8651Chr03:25680021..25680045 (25 bp)
TGGGAGATGAAGATTGCATATATTC
LOC_Os03g45580
OsAffx.13365.1.S1_at--537--7091Chr03:25680194..25680218 (25 bp)
GTCAAATTCTATCGCTCTTGATTTG
LOC_Os03g45580
OsAffx.13365.1.S1_at--289--2251Chr03:25680197..25680221 (25 bp)
AAATTCTATCGCTCTTGATTTGATT
LOC_Os03g45580
OsAffx.13365.1.S1_at--987--111Chr03:25680199..25680223 (25 bp)
ATTCTATCGCTCTTGATTTGATTAA
LOC_Os03g45580
OsAffx.13365.1.S1_at--790--10151Chr03:25680203..25680227 (25 bp)
TATCGCTCTTGATTTGATTAATGCC
LOC_Os03g45580
OsAffx.13365.1.S1_at--1092--9331Chr03:25680205..25680229 (25 bp)
TCGCTCTTGATTTGATTAATGCCAT
LOC_Os03g45580
OsAffx.13365.1.S1_at--952--5491Chr03:25680302..25680326 (25 bp)
GAACAATGTCATGTACAAGAAAAGA
LOC_Os03g45580
OsAffx.13365.1.S1_at--1008--6171Chr03:25680325..25680349 (25 bp)
GAGGAGATCTAACTTGTTGCTTTGA
LOC_Os03g45580
OsAffx.13365.1.S1_at--71--6051Chr03:25680328..25680352 (25 bp)
GAGATCTAACTTGTTGCTTTGATTG
LOC_Os03g45580
OsAffx.13365.1.S1_at--117--3631Chr03:25680337..25680361 (25 bp)
CTTGTTGCTTTGATTGTGGAGCACT
LOC_Os03g45580
Target Sequence 
TGCTTATGACACTAATTACTCACAATATGAGATTTCTCGCCACTTTTTGAATGGTCTTAACATGTCTATTTGGGAGATGA
AGATTGCATATATTCAAAAGTCTGTTGATATGTCCACTTTGACTTTGGATTCACTTTATATAAAACTCAAAACTCATGAG
ATGAATATTCTTTATCGCAAAGTTGATTCTAATTCTAGTGCTTTGGTTTCTCTCTCGACTTCTTTGGATGTTGGTGCTTC
TTCGTCAAATTCTATCGCTCTTGATTTGATTAATGCCATGTCCGATGAGCAACTAGAACAATTCGAGGAGGAGGATTTGG
CTTTGGCTGCTAACAAGATTTCTCGAGCTATGAACAATGTCATGTACAAGAAAAGAGGAGATCTAACTTGTTGCTTTGAT
TGTGGAGCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis