Browse Element(s) Details


OsAffx.13380.1.S1_at

Description tigr:9631.m04492
TID=OsAffx.13380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4630011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46270Os.46314.3.S1_at2/113+26124655..26128916transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46280OsAffx.23366.2.S1_s_at1/113+26130797..26134394transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46290OsAffx.25576.1.S1_at10/113+26139600..26141135hypothetical protein
LOC_Os03g46300OsAffx.13380.1.S1_at11/113+26144227..26145082hypothetical protein
LOC_Os03g46310Os.55226.1.S1_at11/113+26147609..26150637expressed protein
LOC_Os03g46320OsAffx.13381.1.S1_at11/113+26152060..26154556hypothetical protein
LOC_Os03g46330Os.19756.1.S1_at11/113+26156406..26161820Pattern formation protein EMB30, putative, expressed
LOC_Os03g46340Os.12041.1.S1_at11/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.1.S1_x_at4/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.2.S1_x_at1/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13380.1.S1_at--799--9031Chr03:26144275..26144299 (25 bp)
TGCACCCAGGACTACATTGCCAGTG
LOC_Os03g46300
OsAffx.13380.1.S1_at--1018--4331Chr03:26144280..26144304 (25 bp)
CCAGGACTACATTGCCAGTGTGAGA
LOC_Os03g46300
OsAffx.13380.1.S1_at--551--9191Chr03:26144292..26144316 (25 bp)
TGCCAGTGTGAGAGCAAGCTTCTAT
LOC_Os03g46300
OsAffx.13380.1.S1_at--104--10111Chr03:26144314..26144338 (25 bp)
TATGGCCAGTGGCTGTGTGGGCTGT
LOC_Os03g46300
OsAffx.13380.1.S1_at--310--4731Chr03:26144334..26144358 (25 bp)
GCTGTGCTGTGAGGCTGTGAGGGAC
LOC_Os03g46300
OsAffx.13380.1.S1_at--319--3471Chr03:26144367..26144391 (25 bp)
CAGGAAGAAGGCTCACCCAGGAGTG
LOC_Os03g46300
OsAffx.13380.1.S1_at--697--8331Chr03:26144397..26144421 (25 bp)
GGCTGTCAGGGCTCACATGGCGTTC
LOC_Os03g46300
OsAffx.13380.1.S1_at--930--9691Chr03:26144409..26144433 (25 bp)
TCACATGGCGTTCTGCAGGATGTTC
LOC_Os03g46300
OsAffx.13380.1.S1_at--410--871Chr03:26144413..26144437 (25 bp)
ATGGCGTTCTGCAGGATGTTCAGGT
LOC_Os03g46300
OsAffx.13380.1.S1_at--363--991Chr03:26144425..26144449 (25 bp)
AGGATGTTCAGGTCCAACCCCGCCG
LOC_Os03g46300
OsAffx.13380.1.S1_at--1066--4251Chr03:26144492..26144516 (25 bp)
CCGGCGACATGTCGAAGCCGGACAC
LOC_Os03g46300
Target Sequence 
TGCACCCAGGACTACATTGCCAGTGTGAGAGCAAGCTTCTATGGCCAGTGGCTGTGTGGGCTGTGCTGTGAGGCTGTGAG
GGACGAGGCGGGCAGGAAGAAGGCTCACCCAGGAGTGGAGGAGGCTGTCAGGGCTCACATGGCGTTCTGCAGGATGTTCA
GGTCCAACCCCGCCGTCCGGGTCGCCGACGGCATGCGCCAGATGCTCCGGAGGCGGTCCGGCGACATGTCGAAGCCGGAC
AC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis