Browse Element(s) Details


Os.12041.1.S1_at

Description gb:CR285101
DB_XREF= gi:44671667
DB_XREF=CR285101
CLONE=y811g08p3
TID=Os.12041.1
CNT=29
FEA=FLmRNA
TIER=Stack
STK=9
UG=Os.12041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091J20, full insert sequence
FL= gb:AK102364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4634011/11pleckstrin homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46290OsAffx.25576.1.S1_at10/113+26139600..26141135hypothetical protein
LOC_Os03g46300OsAffx.13380.1.S1_at11/113+26144227..26145082hypothetical protein
LOC_Os03g46310Os.55226.1.S1_at11/113+26147609..26150637expressed protein
LOC_Os03g46320OsAffx.13381.1.S1_at11/113+26152060..26154556hypothetical protein
LOC_Os03g46330Os.19756.1.S1_at11/113+26156406..26161820Pattern formation protein EMB30, putative, expressed
LOC_Os03g46340Os.12041.1.S1_at11/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.1.S1_x_at4/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.2.S1_x_at1/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46350OsAffx.3530.1.S1_at11/113+26171073..26172202hypothetical protein
LOC_Os03g46370NANA3+26181248..26182120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46380NANA3+26183412..26184697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46390Os.14113.1.S1_at11/113+26188352..26194787Ras-related protein RHN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12041.1.S1_at--681--1351Chr03:26162470..26162494 (25 bp)
AGAGATCTGAATCATGCTCCGGCAC
LOC_Os03g46340
Os.12041.1.S1_at--206--3231Chr03:26162371..26162395 (25 bp)
CAAGATCTGTCCTAGTTTCCAATGA
LOC_Os03g46340
Os.12041.1.S1_at--295--3331Chr03:26162343..26162367 (25 bp)
CACTGAAGTCCAACTGGCCGTGGAT
LOC_Os03g46340
Os.12041.1.S1_at--695--2091Chr03:26162311..26162335 (25 bp)
ACATCCGTCCTATCGGTGATGCGGA
LOC_Os03g46340
Os.12041.1.S1_at--720--7851Chr03:26162282..26162306 (25 bp)
GGTAGTTTCCAGCAGTCGGAAGCAT
LOC_Os03g46340
Os.12041.1.S1_at--131--8031Chr03:26162241..26162265 (25 bp)
GGAGGTCTCCCCAGAATCAGAAGGC
LOC_Os03g46340
Os.12041.1.S1_at--601--5051Chr03:26162215..26162239 (25 bp)
GCAGCTTGGATATCCCTGTGGTCAA
LOC_Os03g46340
Os.12041.1.S1_at--543--1711Chr03:26162184..26162208 (25 bp)
ACCAGTGAGCGATCATATCCAGGGA
LOC_Os03g46340
Os.12041.1.S1_at--321--2951Chr03:26162142..26162166 (25 bp)
AAGGCCTGGAGCCAAATACATTCTG
LOC_Os03g46340
Os.12041.1.S1_at--919--3031Chr03:26162078..26162102 (25 bp)
AATCCTTTCGAGAATTGCTGTGGCA
LOC_Os03g46340
Os.12041.1.S1_at--358--7791Chr03:26162041..26162065 (25 bp)
GGTGCCTGGTTGTATGTTCATTGTA
LOC_Os03g46340
Target Sequence 
AGAGATCTGAATCATGCTCCGGCACCGATAACTCCCCTCCCTTGACAAAGCACGTCGATGCATCAGATGACGATGTCGAC
AAAGCTTGTGTGAGTGACTCAAGATCTGTCCTAGTTTCCAATGATAACACTGAAGTCCAACTGGCCGTGGATGGGGTCGA
CATCCGTCCTATCGGTGATGCGGAGTGGGGTAGTTTCCAGCAGTCGGAAGCATTGATCGCCGATGTGCGGGAGGTCTCCC
CAGAATCAGAAGGCGGCAGCTTGGATATCCCTGTGGTCAACCCCCCACCAGTGAGCGATCATATCCAGGGAGGCGCAACC
CACCCCTGAAGGCCTGGAGCCAAATACATTCTGGGATTGTTGTGATTATTGAGGATAACCGACTGGGATTTGAATCCTTT
CGAGAATTGCTGTGGCAGGAGTTCGCACCGGTGCCTGGTTGTATGTTCATTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12041.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis