Browse Element(s) Details


Os.19756.1.S1_at

Description gb:AF262214.1
DB_XREF= gi:19879875
GEN=GEP1
TID=Os.19756.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19756 (NCBI UniGene Cluster)
DEF=Oryza sativa guanine nucleotide-exchange protein GEP1 (GEP1) mRNA, complete cds.
PROD=guanine nucleotide-exchange protein GEP1
FL= gb:AF262214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4633011/11Pattern formation protein EMB30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46280OsAffx.23366.2.S1_s_at1/113+26130797..26134394transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g46290OsAffx.25576.1.S1_at10/113+26139600..26141135hypothetical protein
LOC_Os03g46300OsAffx.13380.1.S1_at11/113+26144227..26145082hypothetical protein
LOC_Os03g46310Os.55226.1.S1_at11/113+26147609..26150637expressed protein
LOC_Os03g46320OsAffx.13381.1.S1_at11/113+26152060..26154556hypothetical protein
LOC_Os03g46330Os.19756.1.S1_at11/113+26156406..26161820Pattern formation protein EMB30, putative, expressed
LOC_Os03g46340Os.12041.1.S1_at11/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.1.S1_x_at4/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.2.S1_x_at1/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46350OsAffx.3530.1.S1_at11/113+26171073..26172202hypothetical protein
LOC_Os03g46370NANA3+26181248..26182120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46380NANA3+26183412..26184697retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007047biological_processcell wall organization and biogenesis
GO:0007155biological_processcell adhesion
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009880biological_processembryonic pattern specification
GO:0009942biological_processlongitudinal axis specification
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19756.1.S1_at--947--10351Chr03:26161273..26161297 (25 bp)
TTTTTGGGCTAAGCAGCTTCTGCAA
LOC_Os03g46330
Os.19756.1.S1_at--826--6451Chr03:26161340..26161364 (25 bp)
GATCAAGGTCCGTGGCAAGCGCAGC
LOC_Os03g46330
Os.19756.1.S1_at--981--2771Chr03:26161375..26161399 (25 bp)
AAGAGCTGATCCCTGAGCTGCTCAA
LOC_Os03g46330
Os.19756.1.S1_at--763--3611Chr03:26161466..26161490 (25 bp)
CTTGTGGGAGTTGACATGGCTTCAT
LOC_Os03g46330
Os.19756.1.S1_at--665--6851Chr03:26161510..26161534 (25 bp)
GTTTGCAGTCTGATGTTTTCCCAAG
LOC_Os03g46330
Os.19756.1.S1_at--913--2651Chr03:26161532..26161556 (25 bp)
AAGCCAGGAGTATGAGCAGCACAGC
LOC_Os03g46330
Os.19756.1.S1_at--852--6091Chr03:26161590..26161614 (25 bp)
GAGTCCCGGGACTAGAAAGTTCAGA
LOC_Os03g46330
Os.19756.1.S1_at--510--3691Chr03:26161684..26161708 (25 bp)
CTAGGTTTACCAATTGCTTGCTTTC
LOC_Os03g46330
Os.19756.1.S1_at--298--4931Chr03:26161699..26161723 (25 bp)
GCTTGCTTTCTTATCCACTGAAACG
LOC_Os03g46330
Os.19756.1.S1_at--932--211Chr03:26161734..26161758 (25 bp)
ATATTGTAATTGCAATGCGTGCCCC
LOC_Os03g46330
Os.19756.1.S1_at--744--6931Chr03:26161785..26161809 (25 bp)
GTAGTAGTATTCTGGCGAGCTCGCG
LOC_Os03g46330
Target Sequence 
TTTTTGGGCTAAGCAGCTTCTGCAAGTTGTNNNTNGGAGTCCTCAGCCGGATGGAGAAGTACATCAAGATCAAGGTCCGT
GGCAAGCGCAGCGACAAGCTGCAAGAGCTGATCCCTGAGCTGCTCAAGAACATTCTAATTGCGATGAAGAACAGGGGGAT
CCTCGCAAAGAGGAGCACCATTGGGGGCGACAGCTTGTGGGAGTTGACATGGCTTCATGCGAATAACATCTCGACGAGTT
TGCAGTCTGATGTTTTCCCAAGCCAGGAGTATGAGCAGCACAGCAGTGCCGGTAGCCCGAGAGGACCCAACGGCGTTGAG
TCCCGGGACTAGAAAGTTCAGAAGTTCAGGTGGTGATGGCTGGTTGATGGTTCGGCGTGCCGTGGAGTGTGCAAGTTTAG
TTATTATGTTACTAGGTTTACCAATTGCTTGCTTTCTTATCCACTGAAACGTAAGGTTTTGATATTGTAATTGCAATGCG
TGCCCCCATTGTAAGTTGATCTTGTAAGTTTTGTAGTAGTATTCTGGCGAGCTCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis