Browse Element(s) Details


OsAffx.3530.1.S1_at

Description tigr:9631.m04497
TID=OsAffx.3530.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4635011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46310Os.55226.1.S1_at11/113+26147609..26150637expressed protein
LOC_Os03g46320OsAffx.13381.1.S1_at11/113+26152060..26154556hypothetical protein
LOC_Os03g46330Os.19756.1.S1_at11/113+26156406..26161820Pattern formation protein EMB30, putative, expressed
LOC_Os03g46340Os.12041.1.S1_at11/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.1.S1_x_at4/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.2.S1_x_at1/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46350OsAffx.3530.1.S1_at11/113+26171073..26172202hypothetical protein
LOC_Os03g46370NANA3+26181248..26182120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46380NANA3+26183412..26184697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46390Os.14113.1.S1_at11/113+26188352..26194787Ras-related protein RHN1, putative, expressed
LOC_Os03g46400Os.52098.1.A1_at10/113+26191875..26193585UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase, putative, expressed
LOC_Os03g46410Os.7022.1.S1_at11/113+26194914..26198428expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3530.1.S1_at--1033--3991Chr03:26171823..26171847 (25 bp)
CGTCGCTGGACAACGAGCCACCGGG
LOC_Os03g46350
OsAffx.3530.1.S1_at--840--4351Chr03:26171858..26171882 (25 bp)
CCACCAGCGACGACAGGAAGGCAGG
LOC_Os03g46350
OsAffx.3530.1.S1_at--343--4091Chr03:26171865..26171889 (25 bp)
CGACGACAGGAAGGCAGGGTCACCA
LOC_Os03g46350
OsAffx.3530.1.S1_at--1131--5651Chr03:26171869..26171893 (25 bp)
GACAGGAAGGCAGGGTCACCAAGAA
LOC_Os03g46350
OsAffx.3530.1.S1_at--485--5271Chr03:26171874..26171898 (25 bp)
GAAGGCAGGGTCACCAAGAACACGA
LOC_Os03g46350
OsAffx.3530.1.S1_at--171--1871Chr03:26171907..26171931 (25 bp)
ACGACGAGTACGCTCATCATGGCGC
LOC_Os03g46350
OsAffx.3530.1.S1_at--636--1871Chr03:26171910..26171934 (25 bp)
ACGAGTACGCTCATCATGGCGCCGA
LOC_Os03g46350
OsAffx.3530.1.S1_at--364--6091Chr03:26171912..26171936 (25 bp)
GAGTACGCTCATCATGGCGCCGACG
LOC_Os03g46350
OsAffx.3530.1.S1_at--44--8391Chr03:26172001..26172025 (25 bp)
GGCGCTGGAGAACCGCGAGGCCTCG
LOC_Os03g46350
OsAffx.3530.1.S1_at--4--2631Chr03:26172011..26172035 (25 bp)
AACCGCGAGGCCTCGGAGGAGCGGC
LOC_Os03g46350
OsAffx.3530.1.S1_at--747--3931Chr03:26172100..26172124 (25 bp)
CGGCGAGCAGTGCATGGCCGGGCTC
LOC_Os03g46350
Target Sequence 
CGTCGCTGGACAACGAGCCACCGGGGGGCAGCACGCCACCAGCGACGACAGGAAGGCAGGGTCACCAAGAACACGACGAC
GACGACGACGAGTACGCTCATCATGGCGCCGACGAGAGCTCCGACGACGACGGCGGCCTGGGCGGCGCGATCGGGCGGTG
CGCCGCGATCCTGTCGGTGGCGCTGGAGAACCGCGAGGCCTCGGAGGAGCGGCGGCACAGGGAGGTGGTGGCCGCGGAGG
AGCGGCGCGGGCGGGCGCGGCAGGCGCGGCGCGAGGCCGGCGAGCAGTGCATGGCCGGGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3530.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis