Browse Element(s) Details


Os.14113.1.S1_at

Description gb:AK061203.1
DB_XREF= gi:32971221
TID=Os.14113.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14113 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013150K06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-B04, full insert sequence.
FL= gb:AK061203.1 gb:AK067459.1 gb:AK100036.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4639011/11Ras-related protein RHN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46340Os.12041.1.S1_at11/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.1.S1_x_at4/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46340OsAffx.14528.2.S1_x_at1/113+26161879..26165853pleckstrin homology domain-containing protein, putative, expressed
LOC_Os03g46350OsAffx.3530.1.S1_at11/113+26171073..26172202hypothetical protein
LOC_Os03g46370NANA3+26181248..26182120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46380NANA3+26183412..26184697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46390Os.14113.1.S1_at11/113+26188352..26194787Ras-related protein RHN1, putative, expressed
LOC_Os03g46400Os.52098.1.A1_at10/113+26191875..26193585UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase, putative, expressed
LOC_Os03g46410Os.7022.1.S1_at11/113+26194914..26198428expressed protein
LOC_Os03g46420Os.52340.1.S1_at11/113+26200692..26201799expressed protein
LOC_Os03g46424NANA3+26205738..26205986hypothetical protein
LOC_Os03g46430OsAffx.20858.5.S1_x_at11/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.1.S1_x_at5/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.4.S1_x_at3/113+26210649..26213430hypothetical protein
LOC_Os03g46440Os.11575.2.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.4.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.3.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0045022biological_processearly endosome to late endosome transport
GO:0005769cellular_componentearly endosome
GO:0010009cellular_componentexternal side of endosome membrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14113.1.S1_at--254--9871Chr03:26190722..26190746 (25 bp)
TACAGTGGTGGCTCTTGCTGGCAAC
LOC_Os03g46390
Os.14113.1.S1_at--749--6011Chr03:26194449..26194473 (25 bp)
GAGAGACTGGTCAGCTCTGCTTCAT
LOC_Os03g46390
Os.14113.1.S1_at--172--4811Chr03:26194477..26194501 (25 bp)
GCTCTTGAAGCATAGTTTCGGCCGA
LOC_Os03g46390
Os.14113.1.S1_at--955--6831Chr03:26194491..26194515 (25 bp)
GTTTCGGCCGAGTATTGTCATTATA
LOC_Os03g46390
Os.14113.1.S1_at--872--531Chr03:26194544..26194568 (25 bp)
ATCCCAGAAGTTCTTGTGTGGCCAC
LOC_Os03g46390
Os.14113.1.S1_at--680--7471Chr03:26194559..26194583 (25 bp)
GTGTGGCCACCTTCATGGCTATATA
LOC_Os03g46390
Os.14113.1.S1_at--491--9671Chr03:26194593..26194617 (25 bp)
TCACGCTTATTTCTTTTCATTCCTT
LOC_Os03g46390
Os.14113.1.S1_at--785--3171Chr03:26194681..26194705 (25 bp)
AATTGTGCTCTATCATTGTTACTGT
LOC_Os03g46390
Os.14113.1.S1_at--656--8791Chr03:26194703..26194727 (25 bp)
TGTTCTTTTACATTCGCATTCCCAT
LOC_Os03g46390
Os.14113.1.S1_at--326--7471Chr03:26194733..26194757 (25 bp)
GTGTGACCCATGGTTACTGGTTACT
LOC_Os03g46390
Os.14113.1.S1_at--889--5911Chr03:26194761..26194785 (25 bp)
GAGCTATAGCTGGTGCACGTTGTCC
LOC_Os03g46390
Target Sequence 
TACAGTGGTGGCTCTTGCTGGCAACAAAGCCGATTTGCTAGAGACTAGGCAGGTGCAAATAGAGGAAGCAAAGACATATG
CACAGGAGAATGGGCTTTTCTTCATGGAAACATCTGCGAAAACTGCAACAAATGTGAATGACATATTTTATGAAATTGCA
AAAAGATTGCTTCAAGGACAGCCAGCTCAGAACCCGCAGGCCGGCATGGTCCTCTCCCAGAGACCAAATGAGAGACTGGT
CAGCTCTGCTTCATGCTGCTCTTGAAGCATAGTTTCGGCCGAGTATTGTCATTATAAAATCTAGGAGAGGAAAATTCAAC
AAATATCCCAGAAGTTCTTGTGTGGCCACCTTCATGGCTATATACTCCAGCCTTCACGCTTATTTCTTTTCATTCCTTGT
GTCATGTAAATGTCAATACAAGAATGCCACATCAGAGGCTTGAAATTGGTACCGAAATGTTAATTGTGCTCTATCATTGT
TACTGTTCTTTTACATTCGCATTCCCATGAAATGTGTGACCCATGGTTACTGGTTACTGAAGAGCTATAGCTGGTGCACG
TTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14113.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis