Browse Element(s) Details


Os.52098.1.A1_at

Description gb:AK064709.1
DB_XREF= gi:32974727
TID=Os.52098.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B04, full insert sequence.
FL= gb:AK064709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4640010/11UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46350OsAffx.3530.1.S1_at11/113+26171073..26172202hypothetical protein
LOC_Os03g46370NANA3+26181248..26182120retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46380NANA3+26183412..26184697retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g46390Os.14113.1.S1_at11/113+26188352..26194787Ras-related protein RHN1, putative, expressed
LOC_Os03g46400Os.52098.1.A1_at10/113+26191875..26193585UDP-glucose: chalcononaringenin 2'-O-glucosyltransferase, putative, expressed
LOC_Os03g46410Os.7022.1.S1_at11/113+26194914..26198428expressed protein
LOC_Os03g46420Os.52340.1.S1_at11/113+26200692..26201799expressed protein
LOC_Os03g46424NANA3+26205738..26205986hypothetical protein
LOC_Os03g46430OsAffx.20858.5.S1_x_at11/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.1.S1_x_at5/113+26210649..26213430hypothetical protein
LOC_Os03g46430OsAffx.20858.4.S1_x_at3/113+26210649..26213430hypothetical protein
LOC_Os03g46440Os.11575.2.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.4.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.3.S1_x_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed
LOC_Os03g46440Os.11575.1.S1_a_at11/113+26213876..26221395BTB/POZ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52098.1.A1_at--787--7351Chr03:26192106..26192130 (25 bp)
GTGACTGGGCGGAGCTGATAAATCA
LOC_Os03g46400
Os.52098.1.A1_at--893--2251Chr03:26192087..26192111 (25 bp)
AAATCAGCTAAAAGCGTTACAGCTT
LOC_Os03g46400
Os.52098.1.A1_at--381--6771Chr03:26192072..26192096 (25 bp)
GTTACAGCTTACATCGTCACGAGAC
LOC_Os03g46400
Os.52098.1.A1_at--1082--7091Chr03:26192057..26192081 (25 bp)
GTCACGAGACAGACGCACTGATGCA
LOC_Os03g46400
Os.52098.1.A1_at--665--1971Chr03:26192041..26192065 (25 bp)
ACTGATGCAGTGACAAGGGACTGAC
LOC_Os03g46400
Os.52098.1.A1_at--82--2891Chr03:26192027..26192051 (25 bp)
AAGGGACTGACTCACATGCAGGCCA
LOC_Os03g46400
Os.52098.1.A1_at--708--3851Chr03:26192021..26192045 (25 bp)
CTGACTCACATGCAGGCCAGTAGTA
LOC_Os03g46400
Os.52098.1.A1_at--903--2091Chr03:26192014..26192038 (25 bp)
ACATGCAGGCCAGTAGTAAACAAAT
LOC_Os03g46400
Os.52098.1.A1_at--1076--2491Chr03:26191935..26191959 (25 bp)
AACATCCTGCCCTTTACCAGTGTAT
LOC_Os03g46400
Os.52098.1.A1_at--314--1731Chr03:26191920..26191944 (25 bp)
ACCAGTGTATTACTTCCTCTGTTAC
LOC_Os03g46400
Os.52098.1.A1_at--20--1071Chr03:26191875..26191899 (25 bp)
AGGGTGTAACACATCCTACTAAACT
NONE
Target Sequence 
GTGACTGGGCGGAGCTGATAAATCAGCTAAAAGCGTTACAGCTTACATCGTCACGAGACAGACGCACTGATGCAGTGACA
AGGGACTGACTCACATGCAGGCCAGTAGTAAACAAATACGGAATACTAAAAGATCAAGATTAATTTATACAAGTTCATAA
AAACACAATCCAACATCCTGCCCTTTACCAGTGTATTACTTCCTCTGTTACAGAATAAGTTAATTTAGTACAGGGTGTAA
CACATCCTACTAAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52098.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis