Browse Element(s) Details


OsAffx.13436.1.S1_at

Description tigr:9631.m04907
TID=OsAffx.13436.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative luminal binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5025011/11Luminal binding protein 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50180Os.49985.1.S1_at1/113+28567045..28573223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g50190OsAffx.29687.2.S1_at10/113+28576520..28578055hypothetical protein
LOC_Os03g50190OsAffx.14332.1.S1_x_at1/113+28576520..28578055hypothetical protein
LOC_Os03g50210Os.22831.1.S1_at11/113+28580817..28582548expressed protein
LOC_Os03g50220Os.52754.2.S1_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50220Os.52754.1.S1_x_at11/113+28581945..28585449Tat binding protein 1 containing protein, expressed
LOC_Os03g50230NANA3+28587672..28592810Protein kinase domain containing protein, expressed
LOC_Os03g50240OsAffx.30187.3.S1_at3/113+28594290..28594523hypothetical protein
LOC_Os03g50250OsAffx.13436.1.S1_at11/113+28596259..28598743Luminal binding protein 5 precursor, putative, expressed
LOC_Os03g50260NANA3+28599180..28599434hypothetical protein
LOC_Os03g50270Os.38416.1.A1_at11/113+28600283..28602236expressed protein
LOC_Os03g50280OsAffx.13437.1.S1_at10/113+28604454..28606583expressed protein
LOC_Os03g50290Os.2673.1.S1_at11/113+28612940..2861712414-3-3-like protein S94, putative, expressed
LOC_Os03g50300Os.25254.1.A1_at11/113+28620469..28628207expressed protein
LOC_Os03g50300Os.25254.2.S1_at11/113+28620469..28628207expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009615biological_processresponse to virus
GO:0005783cellular_componentendoplasmic reticulum
GO:0005788cellular_componentendoplasmic reticulum lumen
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13436.1.S1_at--449--5851Chr03:28598057..28598077 (21 bp)
GACCACGGTCTCGATCAAGGTTTTC
LOC_Os03g50250
OsAffx.13436.1.S1_at--273--9491Chr03:28598065..28598175 (25 bp)
TCTCGATCAAGGTTTTCGAGGGCGA
LOC_Os03g50250
OsAffx.13436.1.S1_at--613--1551Chr03:28598180..28598204 (25 bp)
AGCTTGACGAAGGACTGCCGCGAGC
LOC_Os03g50250
OsAffx.13436.1.S1_at--1012--1431Chr03:28598283..28598307 (25 bp)
AGAACGGCATCCTGCACGTGACGGC
LOC_Os03g50250
OsAffx.13436.1.S1_at--329--7571Chr03:28598324..28598348 (25 bp)
GGGCGGTCCAAGTCGATCACCATCA
LOC_Os03g50250
OsAffx.13436.1.S1_at--721--4451Chr03:28598460..28598484 (25 bp)
GCCTCGAGAACTACGTGTACCGCAT
LOC_Os03g50250
OsAffx.13436.1.S1_at--542--1431Chr03:28598466..28598490 (25 bp)
AGAACTACGTGTACCGCATGCGGAG
LOC_Os03g50250
OsAffx.13436.1.S1_at--810--8551Chr03:28598547..28598571 (25 bp)
TGGAGTCCGCCCTGACGGAGGCTCT
LOC_Os03g50250
OsAffx.13436.1.S1_at--827--8691Chr03:28598655..28598679 (25 bp)
TGTGCGGCCCGATCATCAAGCAGGT
LOC_Os03g50250
OsAffx.13436.1.S1_at--838--411Chr03:28598666..28598690 (25 bp)
ATCATCAAGCAGGTCTACAAGAAGA
LOC_Os03g50250
OsAffx.13436.1.S1_at--558--1031Chr03:28598676..28598700 (25 bp)
AGGTCTACAAGAAGAGCGGCGACGC
LOC_Os03g50250
Target Sequence 
GACCACGGTCTCGATCAAGGTTTTCGAGGGCGAGCGGAGCTTGACGAAGGACTGCCGCGAGCTGGGGCGGTTCGACCTGT
CCGGGATTGCGCCGGCGCCGCGCGGCGTGCCGCAGATCGAGGTGACGTTCGAGGTCGACGAGAACGGCATCCTGCACGTG
ACGGCGTCGGACAAGGCGGCGGGGCGGTCCAAGTCGATCACCATCACCAACGACAAGGGCCGGCTCAGCCAGGAGGAGAT
CGACCGGATGGTGCGCGAGGCCGAGGAGTTCGCGGAGGAGGACCGCCGCGTCCGGGAGCGCGTCGACGCGCGCAACCGCC
TCGAGAACTACGTGTACCGCATGCGGAGCGCCGTGCGGGACGGCGGCATGGCCGGCAAGATCGGCGACGACGACAGGGAG
AGGATGGAGTCCGCCCTGACGGAGGCTCTGGAGTGGCTGGAGGACAACGACGGCGGCGCACGGACGGCGGAGAAGGAGGA
CTACGAGGAGAAGCTGAAGGAGGTGGAGCAGGTGTGCGGCCCGATCATCAAGCAGGTCTACAAGAAGAGCGGCGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13436.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis