Browse Element(s) Details


OsAffx.13449.1.S1_at

Description tigr:9631.m04967
TID=OsAffx.13449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5083011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50800OsAffx.3568.1.S1_at11/113+28957190..28957596hypothetical protein
LOC_Os03g50810Os.4149.2.S1_x_at10/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50810Os.4149.1.S1_at2/113+28965228..28969208Protein kinase domain containing protein, expressed
LOC_Os03g50820OsAffx.25670.1.S1_at11/113+28977485..28979935Cytochrome b561 family protein, expressed
LOC_Os03g50830OsAffx.13449.1.S1_at11/113+28980747..28981421hypothetical protein
LOC_Os03g50850Os.11669.1.S1_at10/113+28988496..28994737Splicing factor 3A subunit 3, putative, expressed
LOC_Os03g50860Os.51112.1.S1_at11/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed
LOC_Os03g50860OsAffx.5571.1.S1_at7/113+29001704..29007738cytokinin receptor CRE1b, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13449.1.S1_at--445--571Chr03:28980786..28980810 (25 bp)
ATCCTCTTTATCCACGGACGACTGG
LOC_Os03g50830
OsAffx.13449.1.S1_at--284--10351Chr03:28980792..28980816 (25 bp)
TTTATCCACGGACGACTGGACGACG
LOC_Os03g50830
OsAffx.13449.1.S1_at--651--4971Chr03:28980856..28980880 (25 bp)
GCATCCTTCCTTGTTGGCCGGCGAG
LOC_Os03g50830
OsAffx.13449.1.S1_at--452--4551Chr03:28980943..28980967 (25 bp)
GCCCACTGCGCAGTACTAGGGTTGC
LOC_Os03g50830
OsAffx.13449.1.S1_at--1160--8971Chr03:28981016..28981040 (25 bp)
TGCAGACGAACTAGTCCGGGAGGTC
LOC_Os03g50830
OsAffx.13449.1.S1_at--517--10852Chr03:28981048..28981072 (25 bp)
TTGGCCTTGAGCTTGGTGTCGCAGT
LOC_Os03g50830
OsAffx.13449.1.S1_at--329--10771Chr03:28981054..28981078 (25 bp)
TTGAGCTTGGTGTCGCAGTCGGCAA
LOC_Os03g50830
OsAffx.13449.1.S1_at--724--10831Chr03:28981060..28981084 (25 bp)
TTGGTGTCGCAGTCGGCAACTCCAT
LOC_Os03g50830
OsAffx.13449.1.S1_at--241--9071Chr03:28981288..28981312 (25 bp)
TGCTTGCGTCGCTGCGGAACGCATG
LOC_Os03g50830
OsAffx.13449.1.S1_at--966--8171Chr03:28981303..28981327 (25 bp)
GGAACGCATGCTACGTCGGCGATGA
LOC_Os03g50830
OsAffx.13449.1.S1_at--51--1851Chr03:28981306..28981330 (25 bp)
ACGCATGCTACGTCGGCGATGAGGT
LOC_Os03g50830
Target Sequence 
ATCCTCTTTATCCACGGACGACTGGACGACGGGAGAGGGAGCGACCGACGCCTCCTCTCTCTCCCTCCCGGCATCCTTCC
TTGTTGGCCGGCGAGCGCGCACGGAGAGGGAAAAAGGCATCGGCCAGCGAGAGGGGCGGAGACAGCCGCTGGCCGCCGCC
CACTGCGCAGTACTAGGGTTGCGGAAGTCGGAGGGCGGCAGGAGGATGGCGTGGATGACAGTGAGGAGGGTGCAGACGAA
CTAGTCCGGGAGGTCGGCGCCGTTGGCCTTGAGCTTGGTGTCGCAGTCGGCAACTCCATCTCCAAGGTTCTCTGGATGGC
CACCCTCCACCCCACCTCGCTGCCCAACTGGAACAGGATGCGGATCTCGGTGAACATTATCACGCAGAACCGCGCCAAGT
CGCTGCGGCGGCTGCTTGCGTCGCTGCGGAACGCATGCTACGTCGGCGATGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis