Browse Element(s) Details


OsAffx.13476.1.S1_at

Description tigr:9631.m05211
TID=OsAffx.13476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g531608/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53119NANA3+30414593..30415220NA
LOC_Os03g53130Os.35344.3.S1_x_at11/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130Os.35344.18.S1_x_at10/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53130OsAffx.22940.5.S1_x_at3/113+30419042..30424995transposon protein, putative, Mutator sub-class
LOC_Os03g53140Os.38289.1.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53140Os.38289.2.S1_s_at11/113+30426928..30432534Sec23/Sec24 trunk domain containing protein, expressed
LOC_Os03g53150Os.8585.1.S1_at10/113+30431072..30433699Auxin-responsive protein IAA14, putative, expressed
LOC_Os03g53160OsAffx.13476.1.S1_at8/113+30437817..30438681hypothetical protein
LOC_Os03g53170OsAffx.30088.1.S1_at11/113+30453002..30456985pentatricopeptide, putative, expressed
LOC_Os03g53180OsAffx.3598.1.S1_x_at11/113+30457943..30458401hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13476.1.S1_at--727--2171Chr03:30435707..30435731 (25 bp)
ACACGTGTCGCCTGATGAGCTGGAC
NONE
OsAffx.13476.1.S1_at--717--2791Chr03:30437243..30437267 (25 bp)
AAGAGGAGTTGTTGGATTCCCAGGC
NONE
OsAffx.13476.1.S1_at--1016--6611Chr03:30437253..30437277 (25 bp)
GTTGGATTCCCAGGCCTCCAGGGTG
NONE
OsAffx.13476.1.S1_at--122--7631Chr03:30438509..30438529 (21 bp)
GGGACAGTGCCCACCGACAGCGGAT
LOC_Os03g53160
OsAffx.13476.1.S1_at--310--5651Chr03:30438520..30438544 (25 bp)
GACAGCGGATCCGTCCTTCACAAGA
LOC_Os03g53160
OsAffx.13476.1.S1_at--365--9251Chr03:30438533..30438557 (25 bp)
TCCTTCACAAGACTGGCACCATCAA
LOC_Os03g53160
OsAffx.13476.1.S1_at--361--7831Chr03:30438573..30438597 (25 bp)
GGTCACAACGATCAATGTTGCCGCT
LOC_Os03g53160
OsAffx.13476.1.S1_at--624--2991Chr03:30438586..30438610 (25 bp)
AATGTTGCCGCTCGCATGCATATCG
LOC_Os03g53160
OsAffx.13476.1.S1_at--1105--631Chr03:30438601..30438625 (25 bp)
ATGCATATCGGCAGTGGATCCATCA
LOC_Os03g53160
OsAffx.13476.1.S1_at--288--7971Chr03:30438616..30438640 (25 bp)
GGATCCATCATTCCAGAGGCTGGCA
LOC_Os03g53160
OsAffx.13476.1.S1_at--929--9211Chr03:30438627..30438651 (25 bp)
TCCAGAGGCTGGCATCGTTGTCGTC
LOC_Os03g53160
Target Sequence 
ACACGTGTCGCCTGATGAGCTGGACGGCGCCGATTCTGCCCCCTCCCCGTCTCCCCCTCCTCCGGCCACAGCAGCAAGAA
GAGGAGTTGTTGGATTCCCAGGCCTCCAGGGTGGTGGGCCCCACGTGCCGGGAGGGGTGGGGACAGTGCCCACCGACAGC
GGATCCGTCCTTCACAAGACTGGCACCATCAACGCCGCCACTACTGGGGTCACAACGATCAATGTTGCCGCTCGCATGCA
TATCGGCAGTGGATCCATCATTCCAGAGGCTGGCATCGTTGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis