Browse Element(s) Details


OsAffx.13487.1.S1_at

Description tigr:9631.m05323
TID=OsAffx.13487.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5419011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed
LOC_Os03g54180NANA3+31010290..31010564hypothetical protein
LOC_Os03g54190OsAffx.13487.1.S1_at11/113+31014511..31016225expressed protein
LOC_Os03g54200Os.7237.1.S1_a_at11/113+31028016..31030309expressed protein
LOC_Os03g54210OsAffx.25712.1.S1_at11/113+31031792..31032259hypothetical protein
LOC_Os03g54220Os.23317.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.52485.1.S1_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.23317.1.S2_at11/113+31033044..31037646expressed protein
LOC_Os03g54220Os.49341.1.S1_x_at5/113+31033044..31037646expressed protein
LOC_Os03g54220Os.51537.1.S1_at1/113+31033044..31037646expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13487.1.S1_at--821--231Chr03:31015271..31015295 (25 bp)
ATATACCGGACCATGGGTTGCACCT
LOC_Os03g54190
OsAffx.13487.1.S1_at--544--9471Chr03:31015247..31015271 (25 bp)
TCTGGGAGCTCGATCAAGTTCGTCT
LOC_Os03g54190
OsAffx.13487.1.S1_at--407--9331Chr03:31015219..31015243 (25 bp)
TCTCCTTCGAAGATTCTATGCCGGT
LOC_Os03g54190
OsAffx.13487.1.S1_at--569--791Chr03:31015135..31015159 (25 bp)
ATGTGGAGCTCAGCCTGGGAAGTCT
LOC_Os03g54190
OsAffx.13487.1.S1_at--582--831Chr03:31015084..31015108 (25 bp)
ATGGATTGCCGGAGACTCAGCCAGT
LOC_Os03g54190
OsAffx.13487.1.S1_at--1082--3431Chr03:31015063..31015087 (25 bp)
CAGTCTACCCTTTCCTGAGGAAGGA
LOC_Os03g54190
OsAffx.13487.1.S1_at--361--3431Chr03:31014892..31014916 (25 bp)
CAGATATGATTGTTCCGCAGCGTTT
LOC_Os03g54190
OsAffx.13487.1.S1_at--481--3391Chr03:31014875..31014899 (25 bp)
CAGCGTTTGTTTGGCTCTGAGTTCT
LOC_Os03g54190
OsAffx.13487.1.S1_at--1054--6051Chr03:31014857..31014881 (25 bp)
GAGTTCTTCAGATACCTTGACCGTC
LOC_Os03g54190
OsAffx.13487.1.S1_at--34--10751Chr03:31014841..31014865 (25 bp)
TTGACCGTCATGTTCAGGTTCCTGG
LOC_Os03g54190
OsAffx.13487.1.S1_at--258--3151Chr03:31014756..31014778 (23 bp)
AATTCCTAGGGTTGTGTGCTCAGCA
LOC_Os03g54190
Target Sequence 
ATATACCGGACCATGGGTTGCACCTCTGGGAGCTCGATCAAGTTCGTCTCCATCTCCTTCGAAGATTCTATGCCGGTGGA
TGAAAAGACCATGACAGTGTGGACGCTGGACACGGCCTCTTGGGGATGGACTAAGGATGTGGAGCTCAGCCTGGGAAGTC
TGTGGGAGCTGGAGGACTTCAAGAAGAATGGATTGCCGGAGACTCAGCCAGTCTACCCTTTCCTGAGGAAGGAGGAAGAT
GAAGACAATGCCCTCTACTTCACGCTGTCCAGTTCACTGTTGGGGCCAATCAGCGAATGTGGGGAACCTGCGGTGCACCA
CATGTGCCGCTTCGACATGAGAAGCATGAGGCTCGAGTCCAGCCCTCTTTCTTTTCCCCCAGATATGATTGTTCCGCAGC
GTTTGTTTGGCTCTGAGTTCTTCAGATACCTTGACCGTCATGTTCAGGTTCCTGGTTGTGGCAAAGGCAAGAGGAAGTTG
AATGAGGACTATATACTGATGCTAATTTGCCCAAGTGAATTCCTAGGGTTGTGTGCTCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis