Browse Element(s) Details


OsAffx.13538.1.S1_x_at

Description tigr:9631.m05720
TID=OsAffx.13538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L4L1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5819011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58170Os.54750.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.2.S1_x_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58170Os.11421.1.S1_at11/113+33049599..33057132Stem-specific protein TSJT1, putative, expressed
LOC_Os03g58180NANA3+33076510..33076953hypothetical protein
LOC_Os03g58190OsAffx.13538.1.S1_x_at11/113+33077557..33080431expressed protein
LOC_Os03g58190Os.56300.1.S1_at11/113+33077557..33080431expressed protein
LOC_Os03g58220OsAffx.21756.1.S1_at11/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.3.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified
LOC_Os03g58220OsAffx.21756.2.S1_x_at1/113+33091365..33096352transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13538.1.S1_x_at--1114--4911Chr03:33078308..33078332 (25 bp)
GCTTGCGCAGAGAGGCCAGATTCCA
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--995--3531Chr03:33078285..33078309 (25 bp)
CATCTGATGCTCTGCCTGGAAGAAC
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--706--371Chr03:33078245..33078269 (25 bp)
ATCAACTGCAGACACATCCTTCAAT
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--884--3851Chr03:33078198..33078222 (25 bp)
CTGAAAATGCATCCAGGGCCTGTGT
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--341--8671Chr03:33078178..33078202 (25 bp)
TGTGTGCTCGATGGCTCAACGACTC
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--779--3271Chr03:33078154..33078178 (25 bp)
CAAAATCGCTTCCAGTTCATCAGAG
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--905--4111Chr03:33078122..33078146 (25 bp)
CGAATGTTCAGTGGCCAGCTGCAGC
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--945--6971Chr03:33077909..33077933 (25 bp)
GTACCAGTCGACGATGCGAGCGCTG
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--55--991Chr03:33077856..33077880 (25 bp)
AGGAGTCGCTGCTGACGAATCTTCG
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--271--5791Chr03:33077843..33077867 (25 bp)
GACGAATCTTCGACTGTCTCTGAAC
LOC_Os03g58190
OsAffx.13538.1.S1_x_at--1152--7151Chr03:33077828..33077852 (25 bp)
GTCTCTGAACATCTCCAACGAGGAA
LOC_Os03g58190
Target Sequence 
GCTTGCGCAGAGAGGCCAGATTCCATCTGATGCTCTGCCTGGAAGAACAAACAAGAAGAGAAAATCAACTGCAGACACAT
CCTTCAATCCAAGAAGGAGAACATCACGGCCTGAAAATGCATCCAGGGCCTGTGTGCTCGATGGCTCAACGACTCAAAAT
CGCTTCCAGTTCATCAGAGAAGAGGCCGAATGTTCAGTGGCCAGCTGCAGCATCAACGACCCGGACACCACCTTCACCAA
CGCCAAGAAGCTCCAATCTCTCGGCTTCCCTGACGACGCCATGTCCGCGTGCCCATGCACCTCCGGCATGGAGGATGACG
ATGCCGCCGCCGCCGCCGCCGACGAAGACGATGACGACGAGCCGGCGGCCATTGCCGTCCACGAGCTGGAGCTGGAGGCG
TACCAGTCGACGATGCGAGCGCTGTACGCGTCGGGGCCACTGACGTGGGAGCAGGAGTCGCTGCTGACGAATCTTCGACT
GTCTCTGAACATCTCCAACGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13538.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis