Browse Element(s) Details


OsAffx.13539.1.S1_at

Description tigr:9631.m05727
TID=OsAffx.13539.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative indole-3-glycerol phosphate lyase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5826011/11Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58230Os.10490.1.S1_at11/113+33108780..33111030uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g58240Os.28405.2.S1_at11/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58240Os.28405.1.S1_x_at3/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58250Os.136.1.S1_a_at11/113+33126247..33130722bZIP transcription factor family protein, expressed
LOC_Os03g58260OsAffx.13539.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_x_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58270Os.54735.1.S1_at1/113+33138144..33142211retrotransposon protein, putative, unclassified
LOC_Os03g58280OsAffx.10418.1.S1_at5/113+33143525..33146100hypothetical protein
LOC_Os03g58290NANA3+33147045..33149334Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58300Os.14079.1.S1_at11/113+33153467..33156352Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004834molecular_functiontryptophan synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13539.1.S1_at--498--6051Chr03:33133231..33133255 (25 bp)
GAGATTATGCCGTCTGAATCCATCA
LOC_Os03g58260
OsAffx.13539.1.S1_at--172--5271Chr03:33133216..33133240 (25 bp)
GAATCCATCATCTCTTGTCCATGGA
LOC_Os03g58260
OsAffx.13539.1.S1_at--858--1491Chr03:33133185..33133209 (25 bp)
AGCACAACGGCTGCGCTGAAAGCGA
LOC_Os03g58260
OsAffx.13539.1.S1_at--843--2651Chr03:33133166..33133190 (25 bp)
AAGCGACTTTGCCTTCAGATTTCCT
LOC_Os03g58260
OsAffx.13539.1.S1_at--59--3071Chr03:33133136..33133160 (25 bp)
AATTGCCCAAGTTCTCCAGGAAGAC
LOC_Os03g58260
OsAffx.13539.1.S1_at--668--2431Chr03:33133083..33133107 (25 bp)
AAAATGATCCCCATGGTCCCAGATG
LOC_Os03g58260
OsAffx.13539.1.S1_at--983--1291Chr03:33133063..33133087 (25 bp)
AGATGCTGACACTTTTCTTCCAGTT
LOC_Os03g58260
OsAffx.13539.1.S1_at--209--2891Chr03:33132978..33133002 (25 bp)
AAGGGATACACTTCTTCTATGCTTA
LOC_Os03g58260
OsAffx.13539.1.S1_at--290--10851Chr03:33132886..33132910 (25 bp)
TTGGCGGGCTACCTTGTCAAGTCAG
LOC_Os03g58260
OsAffx.13539.1.S1_at--735--7131Chr03:33132775..33132799 (25 bp)
GTCTTGTCAATTTAGCAGCTGTGCA
LOC_Os03g58260
OsAffx.13539.1.S1_at--915--3111Chr03:33132728..33132752 (25 bp)
AATTTGCATGTTACTCCCTGATGGC
LOC_Os03g58260
Target Sequence 
GAGATTATGCCGTCTGAATCCATCATCTCTTGTCCATGGATGAGGCAGCACAACGGCTGCGCTGAAAGCGACTTTGCCTT
CAGATTTCCTCCCCTAATTGCCCAAGTTCTCCAGGAAGACTGCAATTTGCAGGGGTCACTTGTCTTTCAAAATGATCCCC
ATGGTCCCAGATGCTGACACTTTTCTTCCAGTTCTCCATAACGAATTAAACCCATATATATTCATACACTTCTTCTATGC
TTTTTCGAGGGGAAAGGGATACACTTCTTCTATGCTTATCATCATCATCTAGCTATGACATGTTCTTGACTGGAAATCTG
GAATCAAAATGAACCAAGTGGTTGGTTGGCGGGCTACCTTGTCAAGTCAGAATGAAAGAGATTAAGCATATCTGAATTCC
AGGGACAGTGTAACATTGGAACAAGCAGTGTAACATAAGCAAGTATAGTTGAATTGGTCTTGTCAATTTAGCAGCTGTGC
ATTAGCGAGCAAACAGCTATACTAATTTGCATGTTACTCCCTGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13539.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis