Browse Element(s) Details


OsAffx.13550.1.S1_s_at

Description tigr:9631.m05843
TID=OsAffx.13550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative immediate-early salicylate-induced glucosyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5935011/11UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59300Os.4980.1.S1_at11/113+33704394..33706711expressed protein
LOC_Os03g59310Os.11049.1.S1_at11/113+33707952..3370985640S ribosomal protein S2, putative, expressed
LOC_Os03g59320Os.10146.1.S1_at11/113+33710690..33712549expressed protein
LOC_Os03g59330OsAffx.25765.1.S1_at11/113+33716444..33719478Polygalacturonase family protein, expressed
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13550.1.S1_s_at--444--9431Chr03:33728262..33728286 (25 bp)
TCGTGGAGAGATATCCGCCGCCTGA
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--839--3831Chr03:33728283..33728307 (25 bp)
CTGATCCAGGATCTGACGGACGCGA
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--232--7971Chr03:33728291..33728315 (25 bp)
GGATCTGACGGACGCGACTGCATCT
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--44--4451Chr03:33728318..33728342 (25 bp)
GCCTTGACCATGACTTCCATTCCGG
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--27--10691Chr03:33728332..33728356 (25 bp)
TTCCATTCCGGCTCATTTCATTATC
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--1095--8311Chr03:33728341..33728365 (25 bp)
GGCTCATTTCATTATCGTCGCAATC
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--155--10151Chr03:33728353..33728377 (25 bp)
TATCGTCGCAATCACTTTTTGAAAA
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--624--9351Chr03:33728394..33728418 (25 bp)
TCGAGTGAAAAGCTATGATGACCTT
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--350--8871Chr03:33728409..33728433 (25 bp)
TGATGACCTTTGTATGCTTCTTCCG
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--830--9071Chr03:33728423..33728447 (25 bp)
TGCTTCTTCCGTTCTGTATCATCAA
LOC_Os03g59350
OsAffx.13550.1.S1_s_at--260--431Chr03:33728440..33728464 (25 bp)
ATCATCAACATTTGTTTGTCCCATC
LOC_Os03g59350
Target Sequence 
TCGTGGAGAGATATCCGCCGCCTGATCCAGGATCTGACGGACGCGACTGCATCTCAGCCTTGACCATGACTTCCATTCCG
GCTCATTTCATTATCGTCGCAATCACTTTTTGAAAAATTTTGTAGAAAAAAATCGAGTGAAAAGCTATGATGACCTTTGT
ATGCTTCTTCCGTTCTGTATCATCAACATTTGTTTGTCCCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13550.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis