Browse Element(s) Details


OsAffx.13557.1.S1_x_at

Description tigr:9631.m05924
TID=OsAffx.13557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g601705/11expressed protein
LOC_Os08g366101/11hypothetical protein
LOC_Os03g601801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g60130Os.37576.1.S1_at11/113+34134060..34136924transcription elongation factor S-II family protein, expressed
LOC_Os03g60140OsAffx.3651.1.S1_at9/113+34138016..34140761hypothetical protein
LOC_Os03g60150Os.9250.1.S1_at11/113+34141397..34145205Protein kinase domain containing protein, expressed
LOC_Os03g60170Os.56162.1.A1_x_at11/113+34158881..34161617expressed protein
LOC_Os03g60170Os.56162.1.A1_at11/113+34158881..34161617expressed protein
LOC_Os03g60170OsAffx.13557.1.S1_x_at5/113+34158881..34161617expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_s_at11/113+34166462..34171067expressed protein
LOC_Os03g60180Os.54092.1.S1_at11/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.6045.1.S1_at4/113+34166462..34171067expressed protein
LOC_Os03g60180OsAffx.13557.1.S1_x_at1/113+34166462..34171067expressed protein
LOC_Os03g60190Os.27965.1.S1_at11/113+34173380..34177340oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g60200Os.25194.1.S1_at9/113+34177408..34180577pentatricopeptide, putative, expressed
LOC_Os03g60210OsAffx.3652.1.S1_at11/113+34181098..34182353expressed protein
LOC_Os03g60220Os.53258.1.S1_at11/113+34184028..34185132expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13557.1.S1_x_at--84--8211Chr03:34159337..34159361 (25 bp)
GGAAGGACTCGCTCTGAAACATCAA
LOC_Os03g60170
OsAffx.13557.1.S1_x_at--44--1071Chr03:34159290..34159314 (25 bp)
AGGGTACTATTCTCGACATGCCGTT
LOC_Os03g60170
OsAffx.13557.1.S1_x_at--237--8991Chr03:34159263..34159287 (25 bp)
TGAACCAGTTTCAGTCACCAGGGAA
LOC_Os03g60170
OsAffx.13557.1.S1_x_at--87--2791Chr03:34159159..34159183 (25 bp)
AAGAGACTTCTCGATGGCGACAAGA
LOC_Os03g60170
OsAffx.13557.1.S1_x_at--1054--5291Chr03:34159050..34159074 (25 bp)
GAAGGCACAGGTTTCTAGCATGCAG
LOC_Os03g60170
OsAffx.13557.1.S1_x_at--990--6391NONE
GATCGTGTTGGTGATTTTGCAGTAC
NONE
OsAffx.13557.1.S1_x_at--1014--10231Chr03:34158154..34158178 (25 bp)
TTTGCAGTACAGAGAAGGTTCCAGA
NONE
OsAffx.13557.1.S1_x_at--346--6071Chr03:34158126..34158150 (25 bp)
GAGTTCACCTGAAGAAATTTCGTGC
NONE
OsAffx.13557.1.S1_x_at--31--7333Chr08:22961634..22961657 (24 bp)
GTGCTATACAGCCAAGTTCCTCAAC
LOC_Os08g36610
OsAffx.13557.1.S1_x_at--635--9531Chr03:34157980..34158003 (24 bp)
TCTACTAGGTCTTAGGCGCCTAAAC
NONE
OsAffx.13557.1.S1_x_at--979--4431Chr03:34157963..34157987 (25 bp)
GCCTAAACACACTACCGCAGATGGA
NONE
Target Sequence 
GGAAGGACTCGCTCTGAAACATCAAACAAATTACACATAAACAGTGCAGGGTACTATTCTCGACATGCCGTTCCTGAACC
AGTTTCAGTCACCAGGGAAATCAAAGTGCCGTTGTATGACAGTACAAGGGCCTCTGGAAGAGATCGTGGACCAGAGCTAG
TGGTGACAGGTCCACCAGAAGAGACTTCTCGATGGCGACAAGAACAATACGCACTTCAAATTTTAGAAGACGTGCAAAAT
GCTCGCGTTGCAGAGAAAACTAGGATGGAGATGGAGATCAGAATACTGAAGGCACAGGTTTCTAGCATGCAGAGACAAGC
GATGAACTTGGATCGTGTTGGTGATTTTGCAGTACAGAGAAGGTTCCAGAAAAGAGTTCACCTGAAGAAATTTCGTGCTA
TACAGCCAAGTTCCTCAACCATTTCATATGTGGAAGACAATCTACTAGGTCTTAGGCGCCTAAACACACTACCGCAGATG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13557.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis