Browse Element(s) Details


OsAffx.13644.1.S1_at

Description tigr:9632.m00250
TID=OsAffx.13644.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0343011/11hypothetical protein
LOC_Os10g071102/11hypothetical protein
LOC_Os03g333801/11hypothetical protein
LOC_Os04g071201/11Transposable element protein, putative, Retrotrans_gag
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g03370OsAffx.25862.2.S1_at11/114+1433828..1435758Protein kinase domain containing protein
LOC_Os04g03380OsAffx.13668.1.S1_x_at10/114+1438871..1439586Legume lectins beta domain containing protein
LOC_Os04g03390OsAffx.13643.1.S1_at11/114+1441154..1441815hypothetical protein
LOC_Os04g03400NANA4+1442378..1444203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g03410OsAffx.1674.1.S1_at1/114+1447978..1452114retrotransposon protein, putative, unclassified
LOC_Os04g03420OsAffx.8268.1.S1_at1/114+1454363..1456364retrotransposon protein, putative, unclassified
LOC_Os04g03430OsAffx.13644.1.S1_at11/114+1458180..1459312hypothetical protein
LOC_Os04g03430OsAffx.26961.1.S1_x_at1/114+1458180..1459312hypothetical protein
LOC_Os04g03440OsAffx.13645.1.S1_at11/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.26663.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.13772.1.S1_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03440OsAffx.14945.1.S1_x_at1/114+1464899..1468686hypothetical protein
LOC_Os04g03450OsAffx.20387.1.S1_x_at2/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03450OsAffx.4941.1.S1_at2/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03450OsAffx.10632.1.S1_at1/114+1471645..1479194retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g03460NANA4+1481577..1483432retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13644.1.S1_at--654--51Chr04:1458592..1458616 (25 bp)
ATTGATTGGTGCAGTCTGGTCCAGA
LOC_Os04g03430
OsAffx.13644.1.S1_at--293--8611Chr04:1458598..1458622 (25 bp)
TGGTGCAGTCTGGTCCAGATTCACT
LOC_Os04g03430
OsAffx.13644.1.S1_at--145--193Chr10:3722673..3722697 (25 bp)
ATTTAGTTCAGTCTGGTCCAACCCT
LOC_Os10g07110
OsAffx.13644.1.S1_at--274--7773Chr10:3722687..3722711 (25 bp)
GGTCCAACCCTGTCTATACCCGATT
LOC_Os10g07110
OsAffx.13644.1.S1_at--563--6591Chr04:1458779..1458803 (25 bp)
GATTGCATATCCGAAAATACGCTGA
LOC_Os04g03430
OsAffx.13644.1.S1_at--862--9611Chr04:1459133..1459157 (25 bp)
TCATGCTCAAATAAGGAATCCCCAA
LOC_Os04g03430
OsAffx.13644.1.S1_at--824--5251Chr04:1459148..1459172 (25 bp)
GAATCCCCAAAGTCCTGTCAGTTTA
LOC_Os04g03430
OsAffx.13644.1.S1_at--470--1211Chr04:1459167..1459191 (25 bp)
AGTTTAATGCCACTTCCTTATGCGA
LOC_Os04g03430
OsAffx.13644.1.S1_at--453--591Chr04:1459173..1459197 (25 bp)
ATGCCACTTCCTTATGCGAGGACCA
LOC_Os04g03430
OsAffx.13644.1.S1_at--236--4471Chr04:1459212..1459236 (25 bp)
GCCTCGTCTCTCACATGTTTAGAAG
LOC_Os04g03430
OsAffx.13644.1.S1_at--977--7911Chr04:1459236..1459260 (25 bp)
GGTTGGTTATCGATGCTTTTATTTA
LOC_Os04g03430
Target Sequence 
ATTGATTGGTGCAGTCTGGTCCAGATTCACTAATTTAGTTCAGTCTGGTCCAACCCTGTCTATACCCGATTACGCGCTAT
TGCAGCATTTTCATACAGGTTTAGATAGGGAGTCTGCATTCTACCTTGACATAACTGCTGGAGGGTCATTCATGCACAAA
ACTCTCGCCAAAGGAAAGGAAATTCTCGATTGCATATCCGAAAATACGCTGATAGAGGAAGAGAACTTTCAGGCCAAGGA
CAAGTTTGAGACATCAACTCTAGAGGATGAGAACTCCACAAATGAGCATGAAAGCTTCTCTTTCAAAATCTCCCAGGATT
CATGCTCAAATAAGGAATCCCCAAAGTCCTGTCAGTTTAATGCCACTTCCTTATGCGAGGACCACAACCACCCTTCGGGC
CTCGTCTCTCACATGTTTAGAAGGTTGGTTATCGATGCTTTTATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13644.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis