Browse Element(s) Details


OsAffx.13653.1.S1_at

Description tigr:9632.m00312
TID=OsAffx.13653.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0404011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g04000Os.56163.1.S1_at11/114+1830142..1835393YT521-B-like family protein, expressed
LOC_Os04g04010Os.26873.1.A1_at11/114+1835885..1838730expressed protein
LOC_Os04g04020Os.8704.1.S2_at11/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04020Os.8704.1.S1_at10/114+1845051..1852374Protein transport protein Sec24-like At3g07100, putative, expressed
LOC_Os04g04030Os.52951.1.S1_at2/114+1853455..1856772hypothetical protein
LOC_Os04g04040OsAffx.13653.1.S1_at11/114+1858765..1859492hypothetical protein
LOC_Os04g04050OsAffx.13654.1.S1_at11/114+1859867..1860193hypothetical protein
LOC_Os04g04060OsAffx.13655.1.S1_at11/114+1861757..1863880Dynamin central region family protein, expressed
LOC_Os04g04070OsAffx.26978.1.S1_at2/114+1865197..1867015hypothetical protein
LOC_Os04g04080NANA4+1870083..1871854transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g04090OsAffx.265.1.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04090Os.46314.3.S1_at1/114+1874169..1878387transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g04100OsAffx.31133.2.S1_at11/114+1880497..1882041hypothetical protein
LOC_Os04g04100OsAffx.27757.1.S1_at1/114+1880497..1882041hypothetical protein
LOC_Os04g04109NANA4+1882420..1882648NA
LOC_Os04g04120NANA4+1883826..1890866retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13653.1.S1_at--33--6051Chr04:1858841..1858865 (25 bp)
GAGATCTCGCCGGAGCAAACACAAG
LOC_Os04g04040
OsAffx.13653.1.S1_at--596--8051Chr04:1858904..1858928 (25 bp)
GGAGACGGCGATCCTCGACAATTGT
LOC_Os04g04040
OsAffx.13653.1.S1_at--182--5611Chr04:1858920..1858944 (25 bp)
GACAATTGTCCACGCGCGTATCGAC
LOC_Os04g04040
OsAffx.13653.1.S1_at--249--10151Chr04:1858938..1858961 (24 bp)
TATCGACTCGGCTTGGGCCCAAGGG
LOC_Os04g04040
OsAffx.13653.1.S1_at--1124--2231Chr04:1859204..1859228 (25 bp)
ACAATTCACGGTGATTCTCGCCGCT
LOC_Os04g04040
OsAffx.13653.1.S1_at--1136--4151Chr04:1859222..1859246 (25 bp)
CGCCGCTTCGCGAATGTGGTATGAG
LOC_Os04g04040
OsAffx.13653.1.S1_at--892--6151Chr04:1859290..1859314 (25 bp)
GAGGTTCTAGCCCAAGCAGGCGTTC
LOC_Os04g04040
OsAffx.13653.1.S1_at--756--5751Chr04:1859321..1859345 (25 bp)
GACGGGCAGCATCCTTCGGAGCCAT
LOC_Os04g04040
OsAffx.13653.1.S1_at--935--7811Chr04:1859378..1859402 (25 bp)
GGTAACTAGCACAAGGCCTCGGGAG
LOC_Os04g04040
OsAffx.13653.1.S1_at--563--2891Chr04:1859409..1859433 (25 bp)
AAGGTGGAGGTCAAGCTCTGCCCAT
LOC_Os04g04040
OsAffx.13653.1.S1_at--665--9491Chr04:1859425..1859449 (25 bp)
TCTGCCCATGGCGTCCAAGACAGGG
LOC_Os04g04040
Target Sequence 
GAGATCTCGCCGGAGCAAACACAAGTGCGGGAGGGGGATTCCCCACCAGATGCGCAATGCGTGGGAGACGGCGATCCTCG
ACAATTGTCCACGCGCGTATCGACTCGGCTTGGGCCCAAGGGGATCCAAGTGGAGGAGCACAATTCACGGTGATTCTCGC
CGCTTCGCGAATGTGGTATGAGGTTGGTGGCAAGGCATGGAGTATCAGGGTGGAGGATAGCGAGGGAGGTTCTAGCCCAA
GCAGGCGTTCTGCAGCGACGGGCAGCATCCTTCGGAGCCATCTCCACAAGGCGGCCATGACCAAGTGGACTGGGGTAACT
AGCACAAGGCCTCGGGAGGAGGAGAAGGTGGAGGTCAAGCTCTGCCCATGGCGTCCAAGACAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13653.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis